Gene Dfer_4939 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_4939 
Symbol 
ID8228545 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp5965509 
End bp5967272 
Gene Length1764 bp 
Protein Length587 aa 
Translation table11 
GC content51% 
IMG OID644932787 
Productphosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I 
Protein accessionYP_003089304 
Protein GI255038683 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1109] Phosphomannomutase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTGCAA AATTGGAACC GAATGTGATG ACCAAAGTGA GCAGCTGGCT CAACGGTGAT 
TATGATATCG ATACAAAACA ATCCATTCAA CAACTGATCG ATGAAGGCAA CGATACTGAA
CTGACGGATG CATTTTACAA AGATCTCGAA TTCGGGACAG GCGGGCTTCG CGGGCTGATC
GGCATCGGTT CCAACCGCAT GAACCGCTAC ACCGTGGGTT CGGCAACGCA GGGCTTGGCG
AATTACCTCA ACAAAGCATT CCCGAACGAA GAAAAAAGCG TGGCCGTAGC TTATGACAGC
CGGATCAAGT CGGATGAATT TGCGAAGATC ATCGCGGATA TTTTCACGGC TAATGGCATT
TCCGTTTACC TTTTCGAAGC ATTGCGCCCT ACGCCGGAGC TTTCGTTCGC GATCCGTTTG
CTGGGCTGCA AAAGCGGGGT AGTCGTAACC GCATCACACA ATCCGAAAGA ATACAACGGC
TACAAAGCCT ACTGGAACGA CGGTTCGCAA GTAGTAGCGC CGCATGACAA AAACATTATC
GACGAAGTGA ATGCGATCAC GTCGATCGAC CAGGTGAAAT TTGACGGGGA TGCCTCTAAA
ATCACTAAAA TCGGTGCGGA TGTGGACGAA AAATACATTG ACCATATCCT TTCCCTTTCC
ATTTCAAAAG GTGCATTGGA GCGTCAGAAA GACCTGAAAA TCGTGTACAC GCCATTGCAC
GGAACAGGCG TGACCCTGGT GCCGCAATTG CTGGGCAAAA TGGGTTTCGA AGCCGTAACG
GTGATCGAAG AGCAGGCTGA ACCCAAAGGC AACGGCCAGT TCCCGACGGT GGTTTACCCA
AATCCCGAGG AAAGTGAAGC GATGTCGAAA GCCGTTGAAA AGGCGAAGGA AATCGACGCG
GACCTCGTAA TGGGCACCGA CCCCGACTCC GACCGTGTGG GTATCGCAGT GAAAAACCAC
CACGGCGAAA TTCAGCTCCT GAACGGTAAC CAAACCGCCA GCGTGCTCAT TTATTACCTC
CTGAATGCCT GGAAAGACGC CGGCAAACTC ACCGGAACGC AGTTCGTGTG TAAAACCATC
GTAACCACCG ACCTGATCGA CAAAATGGCG GCGGCTTATG ATGTGAAATG CTACAACACG
CTCACCGGCT TCAAATACAT TGCACAGGTA ATCCGCGAGA AGGAAGGCCA AGAGCAGTTT
ATCGGTGGAG GAGAGGAAAG CTACGGCTAC CTCATCGGCG ACGCGGTGCG TGATAAGGAT
GCGATCGCTT CCTGCGCGAT GATCGCCGAG CTTACGGCCT ACGCGAAAGA CAAAGGCCTT
AGCCTGTTCG ATATGCTGAT GGAAATCTAC AAGCAGTTTG GTTTCTATTA TGAAGGGTTG
ATCTCACTGA CTAAAAAAGG TAAGTCGGGC GCCGACGAAA TCCAGCAAAT GATGGCCGAT
TTCCGCGCTA ACCCGCCGAA AACCATCGCA GGATCGCCGG TGGTGCGCAT GGACGACTAC
AAGGCGTTGA CCACAACGGA TTTCAAATCG GGCAACACGG CGTCCATTCC ATCGGGCGAA
ATGGGCATCG AATCGTCCAA CGTACTTCAA TTCTTTACCG AAGACGGTAC GAAATTCACT
TGCCGCCCAT CCGGTACCGA GCCGAAAATC AAATTCTACG TGGGCGTACG CGCGGCGCTT
GAAAAGAATG AGGACTTCGA CAGCGTTTAC GCTTCGCTGA AAGAGAAGGT AAAAGCGATC
GGCGAGGAGT TGAACCTCAA ATAA
 
Protein sequence
MTAKLEPNVM TKVSSWLNGD YDIDTKQSIQ QLIDEGNDTE LTDAFYKDLE FGTGGLRGLI 
GIGSNRMNRY TVGSATQGLA NYLNKAFPNE EKSVAVAYDS RIKSDEFAKI IADIFTANGI
SVYLFEALRP TPELSFAIRL LGCKSGVVVT ASHNPKEYNG YKAYWNDGSQ VVAPHDKNII
DEVNAITSID QVKFDGDASK ITKIGADVDE KYIDHILSLS ISKGALERQK DLKIVYTPLH
GTGVTLVPQL LGKMGFEAVT VIEEQAEPKG NGQFPTVVYP NPEESEAMSK AVEKAKEIDA
DLVMGTDPDS DRVGIAVKNH HGEIQLLNGN QTASVLIYYL LNAWKDAGKL TGTQFVCKTI
VTTDLIDKMA AAYDVKCYNT LTGFKYIAQV IREKEGQEQF IGGGEESYGY LIGDAVRDKD
AIASCAMIAE LTAYAKDKGL SLFDMLMEIY KQFGFYYEGL ISLTKKGKSG ADEIQQMMAD
FRANPPKTIA GSPVVRMDDY KALTTTDFKS GNTASIPSGE MGIESSNVLQ FFTEDGTKFT
CRPSGTEPKI KFYVGVRAAL EKNEDFDSVY ASLKEKVKAI GEELNLK