Gene Dfer_4885 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_4885 
Symbol 
ID8228491 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp5908591 
End bp5909244 
Gene Length654 bp 
Protein Length217 aa 
Translation table11 
GC content56% 
IMG OID644932734 
Productalkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen 
Protein accessionYP_003089251 
Protein GI255038630 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG1225] Peroxiredoxin 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value0.527569 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.0758496 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAATAA GAATCAGTCT GTGGGTTTCG ATGATTTTAT GCCTGTCGTT GCTGGCGGGC 
CCGGCCTCGG CGGAAGATGG CGAGCGGGGA GCGAGCAGGC AATCCCAGAG AGGTTATCAG
GTAGGCGATG CGGTGTCTAA TTTCCGTTTG AAAAACACCA ACGGAAATAT GGTGTCGCTC
TCGGATTTTG CCAGTTCCAA AGGTGTAATC GTCGTTTTTA CCAGTAACCA TTGCCCGTTC
GCGAAGGCCT ACGAGGACAG GATCATTGCT CTGAACAACA AATTCGCAGG CCAGGGCTTT
CCGGTGATCG CCATCAACCC GAGCGATCCG GGAACGCACC AGGACGATAC ATTTGAAAAA
ATGAAGGAGC GGGCTGCTGC CAAAAATTAC GGTTATCCTT ATCTTGTCGA CGACGCACAG
CAGGTAGCCC GGGCATTCGG GGCCGCGCGC ACGCCGCAGG CATTTGTGTT GCAGAAAAAC
GGTGCGCAGT TTGCCGTGCG GTACGTGGGC ATGATCGACG ACAACCCGCA GGATGCTTCC
GGCGTCACCA AGTTTTATGT GGACGAGGCC GTGACCAACC TGGCCGGCGG GAAGCCGGTC
GTGACAACGC TCACCAAACC CGTGGGCTGC GCCATCAAGT GGAAAAACCA GTGA
 
Protein sequence
MKIRISLWVS MILCLSLLAG PASAEDGERG ASRQSQRGYQ VGDAVSNFRL KNTNGNMVSL 
SDFASSKGVI VVFTSNHCPF AKAYEDRIIA LNNKFAGQGF PVIAINPSDP GTHQDDTFEK
MKERAAAKNY GYPYLVDDAQ QVARAFGAAR TPQAFVLQKN GAQFAVRYVG MIDDNPQDAS
GVTKFYVDEA VTNLAGGKPV VTTLTKPVGC AIKWKNQ