Gene Dfer_4849 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_4849 
Symbol 
ID8228455 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp5862008 
End bp5864416 
Gene Length2409 bp 
Protein Length802 aa 
Translation table11 
GC content52% 
IMG OID644932698 
Productprotein of unknown function DUF214 
Protein accessionYP_003089215 
Protein GI255038594 
COG category[V] Defense mechanisms 
COG ID[COG0577] ABC-type antimicrobial peptide transport system, permease component 
TIGRFAM ID[TIGR03434] Acidobacterial duplicated orphan permease 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.011256 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.10572 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCAAAA ATTATCTAAC GACTTCATTC AGAAACCTTC GGCGTAACTG GAATTTTACG 
CTGATCAACA TCACCGGCCT GACCCTGAGC CTGGCCTGCT GCCTGCTGAT CTTTTTTACA
GTCCGGTACG AGTTGAGCTT TGACAGCCAT CACCAGCATG CCGACCGCCT TTACCGGCTT
CTCAATCAGA ATGTTAATGA TGGGGAAAAA GGGTTCTCGG CCGGCATTCC GCTTCCTGCA
TTGGCTGCTC TCCGCAACGA CTATCCCGAG ATCCGGGAGC ATGTGGCCTG CACATACGGC
ATGCGTGAGA CGCTGATTAC GGTGACGGAC GGAAAGGAAA AGAAGAAGTT TTCGGACCCT
GGCTATAATG TGGCGTTTGT CGGTCCCGAG TATTTCACGA TGTTCGATTA CCGGTGGCTG
AAAGGTTCGC CGTCGCAAGC GCTCAAAAAC CCCGGCTCGG TGGTATTGAC GGAAGGAGAC
GCGCTAAAAT ACTTTGGTAA TGCCGATCCG ATCGGGAAAA CCATCCGGGT GAGAAACCAG
ATGGACTTCG TCGTGACGGG CGTCGTTGCC AACCCGCCTG CAACGACCAA TTTGCCTTTT
ACCACCATGC TTTCGTTCGG CTCGCTGAAA GAATTCGGCG CGTTTACGAA CTGGGACGAT
TGGATATCTT CCTACGGCGG CGGACAGATG TACATCATGC TGCCCGAGCA TGTGAGCGAG
GCGCAGTTTG AAAAGCAATT ACTCGCATTC AACAAAAAAT ACCGCGATCC CAAGGATGCC
GAAACGCTGC GGTTCGTTTT GCAGCCGTTG AAAGACATTC ATTTTGCCAC CAAAATGGGC
AACTACGCGA ACCGCTCGAT CAGCAAGGGA ATGATCTGGA CCATGTCGCT GGTCGGGATA
TTTATCCTTG TTATCGCCTG CGTGAACTTT GTAAACCTCG CCACCGCACA GGCGCTACGC
CGCTCGCGCG AGGTGGGCGT GAGGAAGGTA CTGGGAAGCA CGAGAGGGCA GTTACTGCGC
CAATATTTCT CCGAAACGGG CATTATCACC ACCTTCTCGG TGATCGTAGC ACTCATTGCC
GCGCAGTTAT TACTTCCCTA CATCAGCAAT ACGCTCAACA TCAATGCGGA CAATGTGGTG
TTCTTCAAAG ACCCGTGGAT ATTGCTGTGC TGCATCGCAT TAACGCTTGT TACGACTTTC
CTGGCGGGTT TTTACCCGGC GCTGGTGGTA TCGGGTTACC AGCCGATACT CGCATTGAAA
GGTAAAATGA CCAAGAATGG GAGCAGCCAG ACTAATCTGC GGAGGGGGCT GATCGTACTG
CAATTCTCGA TTTCCCAAGT GATTCTGATC GGCACGCTTA TCGCTTACAG CCAGATGAAG
TATTTCAGAT CCATGGACCT GGGTTTTGAA AAAGACGAGA TCGTGACCAT CGCGATCCCG
GATGAAAAGC AGCTGGAAAC ACTGAGCCAG AAGGTAACGG CCATTCCCGG AGTTAAATCC
ATCACGTACA GTGCATTCAC GCCGATGTCG CGAAGCAATT GGCAAACCGG GTTCAAATAC
GAAAATGATC CCGAATTCCT GGAATTTGAT ATCGTAATGC GCCCTGCGGA CACGTCGTAC
TTCCACACAT TCGGACTGAA AATGGCTGCG GGAAGGATGT ACCTTCCGTC GGATACGGCG
CGGGAATATG TCGTGAACGA GGCATTTGCC CGCAAACTCG GTTTTAAAGA CCCCGAGGGC
ATCATCGGCA AGCGGCTGAC GATCGGCGGC AGCGACTTCA AGTTGCCGAT CGTGGGCGTT
GTGAAAAATT TCAATACTTA CACATTACAC CAGGAAATCA TTCCCTGCGT AATGGCTTCG
ATGCGAAACA ATTACCGCCT GCTGAACGTG AAACTGGATC GGCACGCGGG GCTCGACCAG
GTCCACCGCA TCGAAAAAGC CTGGACGGAA TCATTTCCGG ATTATCTGTT CAAATACACT
TTCTACGACC AGACGCTCGA CAGCTTTTAC GAAAAAGAAG CCAAGCTCTT TTCGCTCTTC
CAGATACTGA GCGCCATTGC AATATTCGTC GGCTGCCTGG GCCTTTATGG CGTGGTAGCG
TTTATGGCCG AGTCGCGTAC GAAAGAAATG GGCATTCGGA AGGCCATTGG CGCATCGGCG
ATGAATATTT TCGGCCTTTT CTCGGTCGAT TTTATCAAGC TGGTGGTGAT TGCGCTCGTC
ATTGCTTCAC CTATCGCCTG GTATTTTATG GACCAGTGGT TGCAGGATTT TAGTTACAAA
GTCAATATCA GCTGGTGGCT GTTTGTGGCT GCTGGTGTGG CGGCGGTGCT TATTGCACTG
GTTACGATCA GTTTCCAAAG CATCAAAGCG GCGCTTACGA ATCCCGTAAC GGCCCTAAGG
AGTGAATAA
 
Protein sequence
MIKNYLTTSF RNLRRNWNFT LINITGLTLS LACCLLIFFT VRYELSFDSH HQHADRLYRL 
LNQNVNDGEK GFSAGIPLPA LAALRNDYPE IREHVACTYG MRETLITVTD GKEKKKFSDP
GYNVAFVGPE YFTMFDYRWL KGSPSQALKN PGSVVLTEGD ALKYFGNADP IGKTIRVRNQ
MDFVVTGVVA NPPATTNLPF TTMLSFGSLK EFGAFTNWDD WISSYGGGQM YIMLPEHVSE
AQFEKQLLAF NKKYRDPKDA ETLRFVLQPL KDIHFATKMG NYANRSISKG MIWTMSLVGI
FILVIACVNF VNLATAQALR RSREVGVRKV LGSTRGQLLR QYFSETGIIT TFSVIVALIA
AQLLLPYISN TLNINADNVV FFKDPWILLC CIALTLVTTF LAGFYPALVV SGYQPILALK
GKMTKNGSSQ TNLRRGLIVL QFSISQVILI GTLIAYSQMK YFRSMDLGFE KDEIVTIAIP
DEKQLETLSQ KVTAIPGVKS ITYSAFTPMS RSNWQTGFKY ENDPEFLEFD IVMRPADTSY
FHTFGLKMAA GRMYLPSDTA REYVVNEAFA RKLGFKDPEG IIGKRLTIGG SDFKLPIVGV
VKNFNTYTLH QEIIPCVMAS MRNNYRLLNV KLDRHAGLDQ VHRIEKAWTE SFPDYLFKYT
FYDQTLDSFY EKEAKLFSLF QILSAIAIFV GCLGLYGVVA FMAESRTKEM GIRKAIGASA
MNIFGLFSVD FIKLVVIALV IASPIAWYFM DQWLQDFSYK VNISWWLFVA AGVAAVLIAL
VTISFQSIKA ALTNPVTALR SE