| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_4776 |
|---|
| Symbol | |
|---|
| ID | 8228382 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 5774453 |
|---|
| End bp | 5775553 |
|---|
| Gene Length | 1101 bp |
|---|
| Protein Length | 366 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 644932625 |
|---|
| Product | GTP-dependent nucleic acid-binding protein EngD |
|---|
| Protein accession | YP_003089142 |
|---|
| Protein GI | 255038521 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0012] Predicted GTPase, probable translation factor |
|---|
| TIGRFAM ID | [TIGR00092] GTP-binding protein YchF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.117268 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.000704522 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCTTC AATGTGGGAT TGTCGGATTG CCGAACGTTG GGAAATCCAC CCTTTTTAAT
GCCATTTCTA CCGGCAAAGC CGAAGCTGCC AACTATCCAT TTTGCACCAT AGAGCCCAAT
GTGGGCGTTG TGACCGTTCC CGACGAACGG CTGGATGTCC TCACCAAGCT GGTTAATCCC
CAGAAAGTGA TCCCGACGAT CATCGAGTTC GTGGACATTG CCGGCCTCGT GAAAGGAGCG
AGCCAGGGAG CAGGTTTGGG AAACAAATTT TTGGCTAATA TCCGCGAGGT AGATGCGATC
GTGCACGTGG TGCGCTGCTT TGCAGATGAT AACGTTGTGC ACGTGGAAGG CCGCGTAGAC
CCGGTTTTTG ACAAAGAAAT CATCGACGCA GAGTTGCAGC TGAAAGACCT GGAATCGATT
GAAAAGAAAA TCCAGAAGAC GGAAAAAGGT GCACGCGCCG GGGATGCCAA AGCCAAAGCA
GAGCTCGAAT GGTTGAAAAA ATATAAGTCG ACGCTGGAAG AAGGCAAGAA TGCGAGAGCC
GTTGAAATCG ACCCCGAAAC AAGGGAATCG GTGATCGGCG ACCTGCAATT GCTTACTGCT
AAACCGGTTC TTTATGTAGC CAATGTGGAC GAAGGTTCGA TGCTAACCGG TAATGAGTAT
TCGGAAAAGC TCCGGGAAGC CGTGAAACAC GAAGGTGCGG ATGTGATTGT GCTTTGCGCG
GCCATTGAAT CGCAGATTTC GGAAATCGAA GATCCCGAAG AGCATGAAAT GTTCCTGAGC
GAGTACGGCC TGGCAGAATC GGGTTTGAGC AAGCTGATCA AAGCTTCTTA CGCGCTTTTG
AACCTTATTA CCTATTTCAC AGCAGGCGTA AAGGAGGTTC GCGCCTGGAC GATCGTGAAA
GGCTGGAAAG CCCCGCAGGC TGCCGGCGTG ATCCACAGTG ATTTTGAAAA AGGTTTTATT
CGCGCCGAAG TAATTAAAAT TGCTGATTAT GAGCAGTATA AAACAGAACC CGCGGTGAAA
GAAGCCGGTA AGATGGCGGT GGAAGGCAAG GAATACGTGG TTGCGGATGG TGACATTATG
CACTTCCGGT TTAATGTGTA G
|
|---|
| Protein sequence | MSLQCGIVGL PNVGKSTLFN AISTGKAEAA NYPFCTIEPN VGVVTVPDER LDVLTKLVNP
QKVIPTIIEF VDIAGLVKGA SQGAGLGNKF LANIREVDAI VHVVRCFADD NVVHVEGRVD
PVFDKEIIDA ELQLKDLESI EKKIQKTEKG ARAGDAKAKA ELEWLKKYKS TLEEGKNARA
VEIDPETRES VIGDLQLLTA KPVLYVANVD EGSMLTGNEY SEKLREAVKH EGADVIVLCA
AIESQISEIE DPEEHEMFLS EYGLAESGLS KLIKASYALL NLITYFTAGV KEVRAWTIVK
GWKAPQAAGV IHSDFEKGFI RAEVIKIADY EQYKTEPAVK EAGKMAVEGK EYVVADGDIM
HFRFNV
|
|---|
| |