| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_4721 |
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| Symbol | |
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| ID | 8228327 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 5703564 |
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| End bp | 5706317 |
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| Gene Length | 2754 bp |
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| Protein Length | 917 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 644932570 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_003089087 |
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| Protein GI | 255038466 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCCGTA CATTACTCCA TATCCTGCTG CTCGTTTCGA GCACCACCAT GCTCCAAGCC
GGCACCCTCA AAGGCAAGCT GCTCGAAGCC GCCACCGGCG AACCCGCGCT GGGCGTGGTG
ATCTCGATCG AAGGTACGAG CCTCCACGAT ATTTCCGGCC TCGATGGCTC GTTCTCCATC
CCGAACCTGC AAAAGGGCTC CTACCGGCTC ACGATCCGGC ATATTTCCTA TGCACCCGTC
CAACGGGAAT TTGCGGTGAA TGGCAACGAG GTAATCCAAA TGGACCTTTC CCTCGAAGCT
GCCGACGTGA AGCTCGCCGA AGTGGCCGTG ACCGGCAAGC GCGACGGCGC GAGCGACAAT
ACGGCGCGGC TCATGGAGCG CAATGCCAGC CAGGTCATGA ATATCGTCTC CGGCAAAACT
ATCCAGATTT CACCCGACCT GACCGTCGCC AATGTGATCC AGCGCATTTC GGGCATTTCC
ATTGAACGCA ACAGCAATGG CGACGGTCAG CATGCGATCC TGCGCGGGAT GGACAAACGA
TATAACTACA CGCTCGTAAA CGGCGTCAAA ATCCCGAGCC CCGATAACAA GTACCGCTAC
GTGCCGCTGG ATATCTTCCC CTCCGACCTG CTCGACCGCC TCGAAGTGTA CAAGGCCCTC
ACGCCCGCCA TGGAAGGCGA CGCGATCGGC GGGGCGGTGA ATATGGTGAT GAAAGACGCA
CCCGACAAAT TTACGTTCTC GGCAAACGTG TCTACCGGCT ACAACGAGCT GTTTGTGGAC
CGTAAGTTCA TGGGTTATGA TTTTAAAAAC ATTCAATCCA AATCACCCTA CGAGCGGAAC
GGCAACCTCT ACAATGCTAC CGCGGCCGAC TTTTCTACCG CCACCGTGGA TTACAAGCTC
AAAACACCGG CCCCCAACCT GCTCGGCAGC ATTGCGGTAG GGAACCGTTT TCTGAACGAC
AAACTCGGCA TTCTCCTCGC GGGAAGTTAC CAAAACACCC ACCGCGGCAG CAACAGCCTT
TTCTTCGACT CCGAAACCGT GGACACCCTG CGCGGCGAAG CGCTCACCAA AATGAGCGAA
CGCCGGTATT CCGAACAGCA GATCCGCTAT GGACTGCATT CCAAAATCGA TTTTCGGGTG
AATGACAAGC ATAAAATCCA GCTTTACAAT GCATTTATGA ACCTGACGAA TGTGCAGGTC
CGGGATGTAA AATCGACCCA GCTTACCATT GGCGGCTACG ATCCGGTAGC GGGCAATGCG
ACCCTCGGCT TCTCTACCCG CTCGCGGCTG ACCAGGCAGC AGATCTTCAA CAGCACATTG
CAGGGCAAGC ACCAGCTGCT CAACGCGCTC GCATTGCAAT GGTCGGCGGT GTATTCCAAA
GCCACCAACG AGGTTCCCGA CAATGTAACC GTGCCGCTCA TTGGCTTCCG GGAGAATTTC
CGGGAAAGGA AGACAACCGT AGGCGACGCA TCCAGGCGCT GGGAGCACAA CTCCGACCGG
GACCTTTCGG CCTATCTCAA TTTGACCTAC AACACCACCA TCGGCTCCAC GCAGCTCGAA
TGGACGGCCG GCGGCTTGTT CCGCGACAAG TCCCGCTCCA ATTTTTACAA CAACTACCAG
CTCCGCCCGG CCGACCCATT TGCCGAATTC GGAAAGGATT TCACGGACTA CACGCAGATC
CGCTGGACAA TCCAAAACCC ACGCGGCTCG GTAGCGAGTG CATTGAACTA CAACGCTACC
GAACAGATCA AAGCGGGTTT CATTCAATTC AAAGCAGAAA CGAAAAATCT CGAAATCCTC
GGCGGCGTGC GTGCCGAGGC GACCCACCAG GGCTATTCAA TGCTTTTCCC GATCGGTGAA
GACCGGCCGA ATGGTAACCA GCAATACACG GACATCCTGC CGAGCCTGCA TTTCAAATAC
AAGCCGGAAG GCAATGTAAA CCTCCGCGCC TCCTACTTCC GGTCGATCAA CCGCCCCGGC
TTCTTCGAAA TCGTACCCTA TCGCATTGTG CTGGAAGAAT ACCAGGAACG CGGAAACCCG
GATCTGAAAC GCGCCGTTGC CGACAATATC GACCTGCGTT ACGAGCTGTT CCCGCGCGCT
TCGGAGCAAT TTATGGTGGG TGTTTTTTAC AAAATGATTA AAGACCCGAT CGAATACACC
CTCCGGCGCG ACGCCGTTCG CGGGCAGGAC ATTTACTACT CGCCGGGCAA TTTCGGGAAT
GCGAAAAACT ATGGTCTGGA AATCGATTAC ATCAAATACG TGAAGCAATT CGGGATCAAG
GCCAACTACA CTTACACGCA TTCGCGCATT GCCACCACGA AATCCAGGCG CATCCGCAAC
GAAAGCGGCG ACCTCGAAAC GATTAATGTC GAGCAAACGC GGCCGCTTTA CGGACAATCG
GCGCATGTAG CCAACCTCTC GGTACTATAT AAAAACCAGC AGAATGGCAT CGATGCCCAG
CTGGCCGGTG GATACACGGG CGACCGTATC AACACGGTTT CGCAGTTTAT CGACAACGAC
CTCTGTCAAA AACGATTTAT CCAAATGGAT GCCTCCCTCG AAAAGACATT CCGTAATGGC
CTGGGCGTGT TCGTGAAAGC CAATAACCTG CTCAACACCC CGATGGAAGT GTATATCAAC
AATGTGAATG CCTCCAATGC CCGCATTCCG AACCAGGACC TGCCGGGCAA GACACTCATC
CGCCGCGACC GCTACCAGCG CTCCTATCTG CTTGGTGTGC GATACAAATT TTAA
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| Protein sequence | MIRTLLHILL LVSSTTMLQA GTLKGKLLEA ATGEPALGVV ISIEGTSLHD ISGLDGSFSI
PNLQKGSYRL TIRHISYAPV QREFAVNGNE VIQMDLSLEA ADVKLAEVAV TGKRDGASDN
TARLMERNAS QVMNIVSGKT IQISPDLTVA NVIQRISGIS IERNSNGDGQ HAILRGMDKR
YNYTLVNGVK IPSPDNKYRY VPLDIFPSDL LDRLEVYKAL TPAMEGDAIG GAVNMVMKDA
PDKFTFSANV STGYNELFVD RKFMGYDFKN IQSKSPYERN GNLYNATAAD FSTATVDYKL
KTPAPNLLGS IAVGNRFLND KLGILLAGSY QNTHRGSNSL FFDSETVDTL RGEALTKMSE
RRYSEQQIRY GLHSKIDFRV NDKHKIQLYN AFMNLTNVQV RDVKSTQLTI GGYDPVAGNA
TLGFSTRSRL TRQQIFNSTL QGKHQLLNAL ALQWSAVYSK ATNEVPDNVT VPLIGFRENF
RERKTTVGDA SRRWEHNSDR DLSAYLNLTY NTTIGSTQLE WTAGGLFRDK SRSNFYNNYQ
LRPADPFAEF GKDFTDYTQI RWTIQNPRGS VASALNYNAT EQIKAGFIQF KAETKNLEIL
GGVRAEATHQ GYSMLFPIGE DRPNGNQQYT DILPSLHFKY KPEGNVNLRA SYFRSINRPG
FFEIVPYRIV LEEYQERGNP DLKRAVADNI DLRYELFPRA SEQFMVGVFY KMIKDPIEYT
LRRDAVRGQD IYYSPGNFGN AKNYGLEIDY IKYVKQFGIK ANYTYTHSRI ATTKSRRIRN
ESGDLETINV EQTRPLYGQS AHVANLSVLY KNQQNGIDAQ LAGGYTGDRI NTVSQFIDND
LCQKRFIQMD ASLEKTFRNG LGVFVKANNL LNTPMEVYIN NVNASNARIP NQDLPGKTLI
RRDRYQRSYL LGVRYKF
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