| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_4710 |
|---|
| Symbol | |
|---|
| ID | 8228316 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 5686506 |
|---|
| End bp | 5688548 |
|---|
| Gene Length | 2043 bp |
|---|
| Protein Length | 680 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 644932559 |
|---|
| Product | xanthan lyase |
|---|
| Protein accession | YP_003089076 |
|---|
| Protein GI | 255038455 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.442658 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGATAC GTAAAAAGAT TGCATTGGCG CAGATCGCCT GTATGATGGC ATTCGTATTA
GCCGGTTTCC GACCGCGGGA ACCGAGGCCT GCGGCCGATG TAACTGCCAG CGTGCAGGCG
GATGTATGCG TGTACGGAGG CACCGCCGCA GGCGTGATAG CGGCCTACAC GGCGAAGAAA
ATGGGCAAGT CCGTCGTACT CATCGAGCCG GGCGGGCATT TGGGCGGTAT GACGTCCGGC
GGCCTCGGCT ACACGGATAT CGGTAACAAA TACGCCATTA CCGGCCTCTC CCGCGACTTC
TACCGCCGCA TTGGGTTGCA TTACGGCAAG TTCGAGCAAT GGACCTTCGA GCCGAAAGTG
GCGAAAAGCA CCTTGCAGCA GTACCTGGAT GAGGCGGGAA TCAAGGTTAT GTACCAGAGT
CGGATCGTCA GCACCCGGAA GTCCGGGGCG GCCATTCAGT CCATTGTTTT GGAAAACAGC
CTGAAACCAG ACGCCAAATC CAACCAGACT ATTGCCGCGA AAATGTACAT CGATTGTTCC
TACGAGGGCG ACCTGATGGC GAAAGCGGGC GTTTCCTACA CCGTAGGACG GGAGGCCAAC
AGCGAGTACA ATGAAACCAT CGACGGCGTG CAGCTCATGC ACGGTCACCA GCTCCCCGAC
GGCATTGATC CTTACAAAAC AGCGGGTAAA CCCGAAAGCG GGCTACTCTG GGGCGTTTCT
CCCGCCAAAT TGGAACCGAA TGGGACCGGC GACAAAAAAG TGCAGGCTTA CAACTACCGC
ATTTGCCTCA CGTCCGACCC GGCCAATATG GTGCCCATTA CCCAGCCGGC AGACTACGAT
GCCTCCCGCT ACGAGCTGCT CGCACGGCTC ATTGCCAAGC AGCCCCAGCG CAAAACGCTG
AACGACTATT TCATTTGGAG TAAAATGCCG AATAACAAAA CGGACATTAA CAACCGTAAT
GGCTTTTCGA CGGACATGAT CGGCATGAAC CATGACTATC CTGACGCAGA TTACAACAAG
CGCGCGGAGA TAATCAAAGC GCACGAAGCC TACACCAAAG GGCTGCTCTA TTTCATCGGC
CACGATCCGC GCGTACCGCA AGAGCTGCGC GAGTCGATGC AGAAATGGGG GTATCCCAAA
GACGAGTATG TAGAAACCGG CAACTGGTCG CCGCAGCTGT ACATCCGCGA GGCGCGGAGA
ATGGTAGGCA GCTACGTGAT GACCCAGGCG CATTGCGAGC TGAAAGAAGT CGTGAAGGAT
GGCGTAGGCA TGGCGGCTTA CCAGATGGAT TCGCACAACA TCCAGCGCAT TGTCGTGAAT
GGCATGGCCA AAAACGAGGG GAATGTGGAG GTAAGCGCCT CGGGACCATA CCCCATTGCC
TACCGCTCGC TGGTTCCGAA GGAGCAGGAG TGTACCAACC TGCTGGTGCC GGTATGCTTG
TCGGCTACGC ACATTGCCTA TGGTTCTATC CGTATGGAGC CGGTGTTTAT GGTGCTCGCG
CAGTCATCCG CAGTGGCGGC GGCCATGGCG ATCGATTCGA AAAAAAGCGT ACAGCAGATC
GACGTTCCTA AGTTGCAGGC CAAACTCAAA TCCGACCCGC TTGTGAACGG CAAAACGCCT
GAAATCCTCG TGGATAATGA GGATACGCAA AATGTTTCTG TGAAAGGAAA CTGGCAACCG
GTCAAAAAAG GCGGTTACGG CCCGTCGTTC CTGACGACAT CCGAAACGGA CAAAGCGGGC
GGCTCGGTCA CATTCACGCC TCAAATCGCC GCGGCGGGTA ACTATCAGAT TTACGCGTAT
TTTCCCAAAG TGGCCAAGCC GGCGTCGGAA ATCAAGCTTT CCGTGAAAGC GGGTAACGAG
GTCAAGGCCA TTTCTGTACT TGAAAAAGAC ATTGTTGTGG AAGGCCAGAC CTCGGGCGAA
TGGTACCACG TAGGCAAATT CAATCTGCCC AAAGGCAATG CCAGCTCGGT GAATATCTCG
TCCGAAGGCG CCTCGGGCGC TGTGGCAGCG GATGCGGTGC TGTTCGTGCC CGAGTCAAAA
TAG
|
|---|
| Protein sequence | MMIRKKIALA QIACMMAFVL AGFRPREPRP AADVTASVQA DVCVYGGTAA GVIAAYTAKK
MGKSVVLIEP GGHLGGMTSG GLGYTDIGNK YAITGLSRDF YRRIGLHYGK FEQWTFEPKV
AKSTLQQYLD EAGIKVMYQS RIVSTRKSGA AIQSIVLENS LKPDAKSNQT IAAKMYIDCS
YEGDLMAKAG VSYTVGREAN SEYNETIDGV QLMHGHQLPD GIDPYKTAGK PESGLLWGVS
PAKLEPNGTG DKKVQAYNYR ICLTSDPANM VPITQPADYD ASRYELLARL IAKQPQRKTL
NDYFIWSKMP NNKTDINNRN GFSTDMIGMN HDYPDADYNK RAEIIKAHEA YTKGLLYFIG
HDPRVPQELR ESMQKWGYPK DEYVETGNWS PQLYIREARR MVGSYVMTQA HCELKEVVKD
GVGMAAYQMD SHNIQRIVVN GMAKNEGNVE VSASGPYPIA YRSLVPKEQE CTNLLVPVCL
SATHIAYGSI RMEPVFMVLA QSSAVAAAMA IDSKKSVQQI DVPKLQAKLK SDPLVNGKTP
EILVDNEDTQ NVSVKGNWQP VKKGGYGPSF LTTSETDKAG GSVTFTPQIA AAGNYQIYAY
FPKVAKPASE IKLSVKAGNE VKAISVLEKD IVVEGQTSGE WYHVGKFNLP KGNASSVNIS
SEGASGAVAA DAVLFVPESK
|
|---|
| |