| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_4690 |
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| Symbol | |
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| ID | 8228296 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | + |
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| Start bp | 5654724 |
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| End bp | 5656631 |
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| Gene Length | 1908 bp |
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| Protein Length | 635 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 644932539 |
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| Product | D-3-phosphoglycerate dehydrogenase |
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| Protein accession | YP_003089056 |
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| Protein GI | 255038435 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0111] Phosphoglycerate dehydrogenase and related dehydrogenases |
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| TIGRFAM ID | [TIGR01327] D-3-phosphoglycerate dehydrogenase
[TIGR01488] Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.35607 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCACAT TAACTCTCAA TCCACCACCG TACATTATCA TTGATTTCGA CAGCACGTTC
ACGAAAGTGG AGGGGCTCGA CGAATTGGCC GCGATCGCCC TCAAAGGCCA TCCGGAGCGT
GATCAGATTG TTCAGAAGAT TTCTGACCTG ACCAACAAGG GTATGAATGG CGAAATGTCG
TTTGCGGATG GTCTGCGCCA GCGAATCGCC TTACTGAAAG GCAACCGTTC GCACATCGAA
GAACTGGTTA CCTTCCTGCG CACAAAGGTT TCGGATTCGT TCAAGCGCAA TACGCAGTTT
TTGACGGAGA ATGCGGAGCA GATTTTTATC GTTTCCAGCG GATTCAAAGA GTTTATCGTT
CCTGTGGCTA CGGAGCTGGG CATCCTGGCC GACCACGTGT ATGCGAACGA CTTCATCTTC
GATGAAGAAG GGAATATTAT CGGGATTGAC GAGGAAAACG TATTGTCGAT GGACGGCGGA
AAGATCAAAA TCCTTTCTGC ACTGAATTTG TCCGGCGACG TTTACGCGAT CGGTGATGGC
TATACGGATT ATGAATTGAA GGCATCCGGC CTGGCCAATC GTTTCTATGC ATTTACTGAA
AACGTGGAGC GGCCGAAAGT AACGGCCGTA GCGGACCATA TTGCTACTTC GTTCGACGAT
TTTCTTTTTG ATAACAAATT CAGCAGAAGC CAGTCTTATC CGAAAAGCCG GATCAAGGTG
TTGCTGCTCG AAAACGTTCA CCCGGTTGCC CGCAAGGCAT TCGAGGACGA AGGATTTAAT
GTCGAGTTCG TAAAAGGCGC CCTCGATGAG GATGAGCTTT GCGAGCGCAT CAAGGACGTT
TCCATCATTG GTATCCGTTC CAAAACCACC ATTACGAAGC GCGTGCTCGA ACATGCGAAC
CGCCTGATGG CGATCGGCGC GTTCTGTATC GGAACCAACC AGATCGACCT CGACGAGGCT
GCAAAAAAAG GCATTGCGGT GTTCAACGCG CCTTATAGCA ACACGCGGTC GGTGGTAGAA
CTGGCTGTGG GCGAGATGAT TTTGCTGATC CGCAATATCG TTGGCAAGAG CAATTCCATG
CACAAGGGTA TTTGGGATAA GTCTGCGAAC GGCAGCTTCG AGATCCGCGG CAAGAAACTC
GGGATGGTCG GTTACGGAAG CATCGGTACG CAGCTTTCGG TTGTGGCCGA GGCGCTGGGG
ATGGATGTGT ATTTTTATGA TGCAGTTGAA AAGCTTTCGA TCGGTAATGC CAAGAAAGTG
AACACATTGG AAGAGCTCCT GGCAATGTCC GATGTGCTGA GCCTTCACGT GGATGGCCGC
AAGGAAAACA CCAACATGAT CGGCAAGCGC GAGTTTGACC TCATGAAAGA CGGCGTGATC
TTCCTGAACC TCTCACGCGG GCACGTGGTG GACATCAAAG CATTGGCTGA TGCCGTGAAA
AGCGGCAAAG TAGCCGGCGC TGGTGTAGAC GTGTTCCCGA AAGAGCCGAA AACAAACGAT
GAAATGTTCG AAAGCGAGCT GCTAGGCCTG CCGAACGTCA TCCTCACCCC GCATATTGGC
GGAAGCACCG AGGAGGCGCA GGAGAATATC GGACATTTCG TGCCTTCCAA ATTGCTGGAA
TTCATGAATA ACGGCAGCTC TTACGGCAGC GTGAACTTCC CCGAAGTGCA GCTGCCTAAG
CTGAAAGATT CACACCGCCT GCTGCACATC CACGCGAACG TACCGGGTGT GCTGGCGAAG
CTGAACCAGA TTTTTGCGAA AAACAATATC AATATCACCG GCCAGTACCT CAAAACCAAC
GAGCATATCG GCTACGTGAT CGTGGATATT GCCAAAGATT ATACAGAAGA ATTTATCCAG
GAAGTGAAAG AGGTTGAAGG AACGATCCGT TTCCGGATGT TATACTAA
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| Protein sequence | MSTLTLNPPP YIIIDFDSTF TKVEGLDELA AIALKGHPER DQIVQKISDL TNKGMNGEMS
FADGLRQRIA LLKGNRSHIE ELVTFLRTKV SDSFKRNTQF LTENAEQIFI VSSGFKEFIV
PVATELGILA DHVYANDFIF DEEGNIIGID EENVLSMDGG KIKILSALNL SGDVYAIGDG
YTDYELKASG LANRFYAFTE NVERPKVTAV ADHIATSFDD FLFDNKFSRS QSYPKSRIKV
LLLENVHPVA RKAFEDEGFN VEFVKGALDE DELCERIKDV SIIGIRSKTT ITKRVLEHAN
RLMAIGAFCI GTNQIDLDEA AKKGIAVFNA PYSNTRSVVE LAVGEMILLI RNIVGKSNSM
HKGIWDKSAN GSFEIRGKKL GMVGYGSIGT QLSVVAEALG MDVYFYDAVE KLSIGNAKKV
NTLEELLAMS DVLSLHVDGR KENTNMIGKR EFDLMKDGVI FLNLSRGHVV DIKALADAVK
SGKVAGAGVD VFPKEPKTND EMFESELLGL PNVILTPHIG GSTEEAQENI GHFVPSKLLE
FMNNGSSYGS VNFPEVQLPK LKDSHRLLHI HANVPGVLAK LNQIFAKNNI NITGQYLKTN
EHIGYVIVDI AKDYTEEFIQ EVKEVEGTIR FRMLY
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