Gene Dfer_4678 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_4678 
Symbol 
ID8228284 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand+ 
Start bp5642269 
End bp5642931 
Gene Length663 bp 
Protein Length220 aa 
Translation table11 
GC content53% 
IMG OID644932527 
Productiron (metal) dependent repressor, DtxR family 
Protein accessionYP_003089044 
Protein GI255038423 
COG category[K] Transcription 
COG ID[COG1321] Mn-dependent transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones47 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.289073 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGAATT CCTTCACAGA AGAAAATTAT TTAAAGATCA TCCATGCACT TTCGGGACGC 
GAAGGAGTGG AGGTGAGCAC CAACGCGCTG GCCGAAAGCA CATCCACCCG CGCGGCGTCG 
GTGACCGACA TGCTGCGTAA GCTGGCTGAA AAGGGATTGA TACACTATAA AAAATACCAG 
GGTGTGACGC TCACCGAGAG CGGGGAGAAG GTGGCGATCA AAGTGATCCG CAAGCATCGC 
TTGTGGGAGG TTTTTCTCGT TGAAAAGCTG GGCTTCGGCT GGGACGAAGT GCACGACATT 
GCCGAGGAAC TGGAACATAT TCCGTCGGAA GTGCTGGTGG AAAAGCTCGA TGCTTTCCTG 
GGCCATCCCA AGTTCGATCC CCACGGCGAC CCCATTCCGG ATGCCAAAGG AAACCTTACC 
GAACCCGATT ACCTGATCCT GACCGACGTG CAGGTTGGTG AAAAAGTGTT AATGATGGGG 
GTGCTCGACC ATGCACCGTC GTTCCTGCAA CACCTTGATC GGTCGGGTAT TACGCTAGGG 
GCGGTGATTG AGATGAAGGA AATAAATGAA TACGACAAGT CGGCGTCCGT ACAGATTAAC 
GGCGGCCCGA CGTTGTTTAT CAGTCTCGAA GTGTCTAAAA ACCTGCTGGT ACAGCGCCGA 
TGA
 
Protein sequence
MQNSFTEENY LKIIHALSGR EGVEVSTNAL AESTSTRAAS VTDMLRKLAE KGLIHYKKYQ 
GVTLTESGEK VAIKVIRKHR LWEVFLVEKL GFGWDEVHDI AEELEHIPSE VLVEKLDAFL 
GHPKFDPHGD PIPDAKGNLT EPDYLILTDV QVGEKVLMMG VLDHAPSFLQ HLDRSGITLG 
AVIEMKEINE YDKSASVQIN GGPTLFISLE VSKNLLVQRR