| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_4654 |
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| Symbol | |
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| ID | 8228260 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | + |
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| Start bp | 5618568 |
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| End bp | 5620586 |
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| Gene Length | 2019 bp |
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| Protein Length | 672 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 644932503 |
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| Product | excinuclease ABC subunit B |
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| Protein accession | YP_003089020 |
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| Protein GI | 255038399 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0556] Helicase subunit of the DNA excision repair complex |
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| TIGRFAM ID | [TIGR00631] excinuclease ABC, B subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.0301682 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.677455 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACTTCG AACTCACTTC AGAATACCAG CCGACGGGCG ATCAGCCGGA GGCCATCAAC
CAACTAATAC AAGGAATTGA AAACGGAGAA CCTGCCCAGA CGCTTCTGGG TGTGACGGGC
TCCGGGAAAA CATTTACGGT GGCCAATGTG GTGGCGAAAG TTAACAAACC CACTTTGGTC
CTGAGCCACA ACAAAACGCT GGCCGCCCAG CTCTACGGCG AATTCAAGCA ATTCTTCCCC
GGCAACGCTG TCGAGTATTT CATCAGCTAC TACGATTACT ACCAGCCGGA AGCATTCATT
TCCAGCACCA ATACCTACAT TGAGAAGGAC CTGATGATCA ATCAGGAGAT CGAGAAGCTC
CGGCTCCATA CGGTGTCGTC GCTCATGAGC GGGCGCCGGG ATGTGATCGT GGTGGCGTCG
GTATCGTGCA TTTATGGTGC AGGTAACCCG CTGGAATACA AAAAGAGCAT TGTGAGCGCC
AAATTAGGGG ACGTTGTGCC CCGTAACCAG TTTTTGTTCA GGCTGGTGGA GATCCTTTAC
AGTCGTACCG AAGTGGAGTT CAACCGAGGG ACGTTCCGGG TGAAAGGCGA CACCGTCGAT
GTGTTCCCGG GTTACGCGGA TTTTGCCTAT CGGTTCATCT TTTTTGGGGA TGAAATAGAG
GAAATTCAGC GTATTGAGCC CGAAACGGGG AAAAAGATTT CTTCCGAAAA AGCCATTGCC
ATATTTCCTG CCAACCTTTT CGTTACAGGG CGCGATGTAC TGAACCAGTC CATCAAGGAG
ATCCAGGACG ATTTGCAGAT GCAGATCAAA TACTTCATCG GCGAGGGCCG GCTGGCGGAG
GCGGAGCGGG TGAAAGAGCG TACCGAATTT GATATGGAAA TGATGCGCGA GCTTGGCTAT
TGCTCTGGTA TTGAGAACTA TTCAAGGTAT TTTGACCGGC GGATGCCCGG CCAGCGGCCA
TTTTGCCTGC TGGATTATTT CCCGGAAGAC TTCCTGATGG TGGTCGATGA AAGCCACGTG
ACGATGCCGC AGATCCGCGC GATGTGGGGC GGCGACCGCT CGCGCAAAGA GGCTTTGGTG
GAATACGGGT TCCGGTTGCC GTCGGCGTTG GACAACCGGC CGCTGACCTT CCAGGAGTTC
GAAGACATGA CGCCGCAAAC CATTTTCGTG AGCGCTACGC CTGCTGATTA TGAATTACGC
AAATCGGAAG GGGTTGTGGT GGAGCAGATT ATCCGCCCGA CTGGCTTGCT TGACCCTGAA
ATTGAAGTCA GGCCAAGCCT GAACCAGATT GACGACTTGC TGGAAGAAAT TACCGAGCGA
ATCAAGCTCG GCGATCGCAT CCTGGTCACA ACCTTGACAA AACGGATGGC CGAAGAACTC
AGCAAATACC TCGACCGTGT GGGTATCAAA TGCCGTTACA TTCATTCGGA AGTGAAGGCG
CTGGACCGCG TGGAAATCCT CAGGGAGCTT CGATTGGGCA TCTTCGACGT GCTGGTGGGC
GTAAACCTGC TGCGCGAGGG CCTCGACTTA CCCGAAGTAT CACTCGTAGC CATTATGGAT
GCCGACAAGG AAGGCTTCCT GCGCGACACC CGCTCGATGA TCCAGACGAT CGGCCGCGCC
GCGCGAAACG ACCGCGGAAA GGTAATTATG TACGCCGATA CCATTACCGG CTCGATGCAG
CTCGCGATCG ACGAAACGAA CCGTCGCCGG AGCATTCAAA TGGACTACAA CCTGGCCAAT
GGCATCACGC CGAAAACCGT GCGCAAATCC AAAGAGGCCA TTATGGAGCA AACCTCCGTG
GCCGATTCCA AGGTCCGGAA AGTGTACGTC GAGCCCGAAG AAGTCCGCAT CGCCGCCGAT
CCGGTCGTTC AGTACATGGG CAAAACCGAC CTGCAAAAAC TCATCGCCGA AACCCAGCGC
AAAATGGAAT CCGCCGCCAA AGATCTCGAC TTCTTGGAAG CTGCGAGGTT GCGGGATGAA
TTGTTGCAGT TAAAGGCGCG GGTGCAGGAG CAGGGCTAG
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| Protein sequence | MNFELTSEYQ PTGDQPEAIN QLIQGIENGE PAQTLLGVTG SGKTFTVANV VAKVNKPTLV
LSHNKTLAAQ LYGEFKQFFP GNAVEYFISY YDYYQPEAFI SSTNTYIEKD LMINQEIEKL
RLHTVSSLMS GRRDVIVVAS VSCIYGAGNP LEYKKSIVSA KLGDVVPRNQ FLFRLVEILY
SRTEVEFNRG TFRVKGDTVD VFPGYADFAY RFIFFGDEIE EIQRIEPETG KKISSEKAIA
IFPANLFVTG RDVLNQSIKE IQDDLQMQIK YFIGEGRLAE AERVKERTEF DMEMMRELGY
CSGIENYSRY FDRRMPGQRP FCLLDYFPED FLMVVDESHV TMPQIRAMWG GDRSRKEALV
EYGFRLPSAL DNRPLTFQEF EDMTPQTIFV SATPADYELR KSEGVVVEQI IRPTGLLDPE
IEVRPSLNQI DDLLEEITER IKLGDRILVT TLTKRMAEEL SKYLDRVGIK CRYIHSEVKA
LDRVEILREL RLGIFDVLVG VNLLREGLDL PEVSLVAIMD ADKEGFLRDT RSMIQTIGRA
ARNDRGKVIM YADTITGSMQ LAIDETNRRR SIQMDYNLAN GITPKTVRKS KEAIMEQTSV
ADSKVRKVYV EPEEVRIAAD PVVQYMGKTD LQKLIAETQR KMESAAKDLD FLEAARLRDE
LLQLKARVQE QG
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