Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_4648 |
Symbol | |
ID | 8228254 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | - |
Start bp | 5612958 |
End bp | 5614919 |
Gene Length | 1962 bp |
Protein Length | 653 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 644932497 |
Product | TonB-dependent receptor |
Protein accession | YP_003089014 |
Protein GI | 255038393 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.34211 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACAGCT CGCGCGCGCT GAACGAGGTG GTCATCACCG GCCAGTCAGA GCCGCAGTCG CTGCGCAACT CGGTATACCA GGTGCGCACG ATCGATAGCG AACGAATTCG GCTGCGTGGT GCTACCAACC TGCAAACGAT CCTCAACACA GAGCTTGGAA TACGGTTTTC AAACGATTTG ACCCTCGGCA CGAGCGACAT TCAGCTCATG GGAATGTCGG GCCAGGGCGT TAAGATCCTG CTCGACGGCA TTCCGATGGT CGACCGGGGC AGCACGCGCG AGAGCCTTGG GCAGATCGAT ATCAACACGA TCGAGCGCGT TGAAATCGTG GAAGGGCCGA TGTCGGTCAT GTACGGCACC GATGCGCTGG CGGGCGTAAT CAACATCATC ACCAAAAAAG GCACCGACGG CTCGTCGCTG ACGGTCAATG CGCGGTTACA GGAGGAAACG GCGGGAGGCG AATATGACCC TTTTACCAAA AAAGGAACTC ATAACCAGGG CCTGGGGATC GTGTGGCAGG CCGGGCAACT GCAACTTTCA GGCAATGTAA CCCGAAACAA TTTCGGAGGC TGGCAGGGCG GCGCAACCGG CCGGGCCAAA GCGTGGCTGC CCAAAGAGCA GATGCTTTAC ACCACCGGCG CGCGCTTTTC GGGAAAGAAA TGGAACCTGT GGTACCGTTT CAACGGCACC GACGAGACAA TCCAATTTCT TGGCGACCTG AATACCGTCG GCGAAGCAGC TGATAAGGAT TACATTACCA AACGCTGGTT TCATCAGCTG CAATCGGAAA TCAAGGTCAG CGACAAGCTA AATCTGACCG CCGTGGGCTC CTACACCGAT TACTCCCGCC GCACATTAAG TACCAACCTC GATTCCTCCG GCCGCCGGAC ACTGTCACTC GAACCGGGCT CGCAGGATAA ATCGGTCTTC ACCACCGGAT TTTTCCGCGG AACGGCATTC TACAAGGCCA CTGACTATCT TTCGTTGCTG GCGGGAATCG ATTATTCGAA CAACAATGCA TCGGGTGCGC GCATTCTTGC CACGCCCACG ATCAACGAAT ATGCCTTATT TGTAGCTCCT GAAATCCGCC TGGGCAATTT CTTCAAGCTC ACGCCGGGTT TGCGTTTCCT GAAAAACTCG ATTTACGACG CGCCGCCGGC GATCCCGTCG ATAAACGGTA AGATTACGCT CGGCAAGTCG CTCGACTTCC GTTTCGGTTA TGCGCGGGGA TTTCGCTCGC CTGCATTGCG TGAGCTGTAT TTCGACTTTC ACGACTCCTC GCACTCCATT AACGGTAATG TGAACCTGAA AGCGGAGTAC TCCAACAGTT ACAACGCATT TCTCGTATGG CAGGCTACCC GCCGCGAGGG CCTGAGCATC AGCTCCACGC TCGGCGGATT TTACAACGTA TTTCACGACA TGATCGACTT CGCCACCGAC CCGAACGACG CCTCCCAGAC GACTTACATG AATGTGCATT TGAACAAAAC AACCGGTATC ACGCTGGATA ACAAGCTCTT CTGGAAAAAT TTACAAGCGA CGCTCGGCGC GACTTACATC GGTCGTTACA ACGAGTTTTC GGATTCGGAC TTCGGCTCGC TGCCCGAGTT TGTGTGGTCT GCCGAGATCA ATACCAACCT GCTTTACACA TTCAAAAAAG CCGGTGCGAG CATTAACCTG TTCTACAAAT ACTCCGGCAA GCGCCCGGTT TACCAGAGCG TCGATCTGGT GACCGTACAC CTGGCCGAAA CCGCTGGCTT CCACATGGCC GACCTCACGC TCAGCAAGAC GCTCGGGAAG ACGATCAACC TGCTGGGCGG TGTGAAAAAC CTGTTCGACG TGACCAACCT CCGGAACACA TCCATCGATA CCGGCGGGGC GCACAGCACA GGCGGCCCGG TACCAATGTC TTTCGGCCGT TCGTATTTCC TCGGCCTTAG TTTTCAATGG ACAAAGCATT AA
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Protein sequence | MDSSRALNEV VITGQSEPQS LRNSVYQVRT IDSERIRLRG ATNLQTILNT ELGIRFSNDL TLGTSDIQLM GMSGQGVKIL LDGIPMVDRG STRESLGQID INTIERVEIV EGPMSVMYGT DALAGVINII TKKGTDGSSL TVNARLQEET AGGEYDPFTK KGTHNQGLGI VWQAGQLQLS GNVTRNNFGG WQGGATGRAK AWLPKEQMLY TTGARFSGKK WNLWYRFNGT DETIQFLGDL NTVGEAADKD YITKRWFHQL QSEIKVSDKL NLTAVGSYTD YSRRTLSTNL DSSGRRTLSL EPGSQDKSVF TTGFFRGTAF YKATDYLSLL AGIDYSNNNA SGARILATPT INEYALFVAP EIRLGNFFKL TPGLRFLKNS IYDAPPAIPS INGKITLGKS LDFRFGYARG FRSPALRELY FDFHDSSHSI NGNVNLKAEY SNSYNAFLVW QATRREGLSI SSTLGGFYNV FHDMIDFATD PNDASQTTYM NVHLNKTTGI TLDNKLFWKN LQATLGATYI GRYNEFSDSD FGSLPEFVWS AEINTNLLYT FKKAGASINL FYKYSGKRPV YQSVDLVTVH LAETAGFHMA DLTLSKTLGK TINLLGGVKN LFDVTNLRNT SIDTGGAHST GGPVPMSFGR SYFLGLSFQW TKH
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