Gene Dfer_4648 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_4648 
Symbol 
ID8228254 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp5612958 
End bp5614919 
Gene Length1962 bp 
Protein Length653 aa 
Translation table11 
GC content55% 
IMG OID644932497 
ProductTonB-dependent receptor 
Protein accessionYP_003089014 
Protein GI255038393 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG4771] Outer membrane receptor for ferrienterochelin and colicins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.34211 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACAGCT CGCGCGCGCT GAACGAGGTG GTCATCACCG GCCAGTCAGA GCCGCAGTCG 
CTGCGCAACT CGGTATACCA GGTGCGCACG ATCGATAGCG AACGAATTCG GCTGCGTGGT
GCTACCAACC TGCAAACGAT CCTCAACACA GAGCTTGGAA TACGGTTTTC AAACGATTTG
ACCCTCGGCA CGAGCGACAT TCAGCTCATG GGAATGTCGG GCCAGGGCGT TAAGATCCTG
CTCGACGGCA TTCCGATGGT CGACCGGGGC AGCACGCGCG AGAGCCTTGG GCAGATCGAT
ATCAACACGA TCGAGCGCGT TGAAATCGTG GAAGGGCCGA TGTCGGTCAT GTACGGCACC
GATGCGCTGG CGGGCGTAAT CAACATCATC ACCAAAAAAG GCACCGACGG CTCGTCGCTG
ACGGTCAATG CGCGGTTACA GGAGGAAACG GCGGGAGGCG AATATGACCC TTTTACCAAA
AAAGGAACTC ATAACCAGGG CCTGGGGATC GTGTGGCAGG CCGGGCAACT GCAACTTTCA
GGCAATGTAA CCCGAAACAA TTTCGGAGGC TGGCAGGGCG GCGCAACCGG CCGGGCCAAA
GCGTGGCTGC CCAAAGAGCA GATGCTTTAC ACCACCGGCG CGCGCTTTTC GGGAAAGAAA
TGGAACCTGT GGTACCGTTT CAACGGCACC GACGAGACAA TCCAATTTCT TGGCGACCTG
AATACCGTCG GCGAAGCAGC TGATAAGGAT TACATTACCA AACGCTGGTT TCATCAGCTG
CAATCGGAAA TCAAGGTCAG CGACAAGCTA AATCTGACCG CCGTGGGCTC CTACACCGAT
TACTCCCGCC GCACATTAAG TACCAACCTC GATTCCTCCG GCCGCCGGAC ACTGTCACTC
GAACCGGGCT CGCAGGATAA ATCGGTCTTC ACCACCGGAT TTTTCCGCGG AACGGCATTC
TACAAGGCCA CTGACTATCT TTCGTTGCTG GCGGGAATCG ATTATTCGAA CAACAATGCA
TCGGGTGCGC GCATTCTTGC CACGCCCACG ATCAACGAAT ATGCCTTATT TGTAGCTCCT
GAAATCCGCC TGGGCAATTT CTTCAAGCTC ACGCCGGGTT TGCGTTTCCT GAAAAACTCG
ATTTACGACG CGCCGCCGGC GATCCCGTCG ATAAACGGTA AGATTACGCT CGGCAAGTCG
CTCGACTTCC GTTTCGGTTA TGCGCGGGGA TTTCGCTCGC CTGCATTGCG TGAGCTGTAT
TTCGACTTTC ACGACTCCTC GCACTCCATT AACGGTAATG TGAACCTGAA AGCGGAGTAC
TCCAACAGTT ACAACGCATT TCTCGTATGG CAGGCTACCC GCCGCGAGGG CCTGAGCATC
AGCTCCACGC TCGGCGGATT TTACAACGTA TTTCACGACA TGATCGACTT CGCCACCGAC
CCGAACGACG CCTCCCAGAC GACTTACATG AATGTGCATT TGAACAAAAC AACCGGTATC
ACGCTGGATA ACAAGCTCTT CTGGAAAAAT TTACAAGCGA CGCTCGGCGC GACTTACATC
GGTCGTTACA ACGAGTTTTC GGATTCGGAC TTCGGCTCGC TGCCCGAGTT TGTGTGGTCT
GCCGAGATCA ATACCAACCT GCTTTACACA TTCAAAAAAG CCGGTGCGAG CATTAACCTG
TTCTACAAAT ACTCCGGCAA GCGCCCGGTT TACCAGAGCG TCGATCTGGT GACCGTACAC
CTGGCCGAAA CCGCTGGCTT CCACATGGCC GACCTCACGC TCAGCAAGAC GCTCGGGAAG
ACGATCAACC TGCTGGGCGG TGTGAAAAAC CTGTTCGACG TGACCAACCT CCGGAACACA
TCCATCGATA CCGGCGGGGC GCACAGCACA GGCGGCCCGG TACCAATGTC TTTCGGCCGT
TCGTATTTCC TCGGCCTTAG TTTTCAATGG ACAAAGCATT AA
 
Protein sequence
MDSSRALNEV VITGQSEPQS LRNSVYQVRT IDSERIRLRG ATNLQTILNT ELGIRFSNDL 
TLGTSDIQLM GMSGQGVKIL LDGIPMVDRG STRESLGQID INTIERVEIV EGPMSVMYGT
DALAGVINII TKKGTDGSSL TVNARLQEET AGGEYDPFTK KGTHNQGLGI VWQAGQLQLS
GNVTRNNFGG WQGGATGRAK AWLPKEQMLY TTGARFSGKK WNLWYRFNGT DETIQFLGDL
NTVGEAADKD YITKRWFHQL QSEIKVSDKL NLTAVGSYTD YSRRTLSTNL DSSGRRTLSL
EPGSQDKSVF TTGFFRGTAF YKATDYLSLL AGIDYSNNNA SGARILATPT INEYALFVAP
EIRLGNFFKL TPGLRFLKNS IYDAPPAIPS INGKITLGKS LDFRFGYARG FRSPALRELY
FDFHDSSHSI NGNVNLKAEY SNSYNAFLVW QATRREGLSI SSTLGGFYNV FHDMIDFATD
PNDASQTTYM NVHLNKTTGI TLDNKLFWKN LQATLGATYI GRYNEFSDSD FGSLPEFVWS
AEINTNLLYT FKKAGASINL FYKYSGKRPV YQSVDLVTVH LAETAGFHMA DLTLSKTLGK
TINLLGGVKN LFDVTNLRNT SIDTGGAHST GGPVPMSFGR SYFLGLSFQW TKH