| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_4640 |
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| Symbol | |
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| ID | 8228246 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 5602344 |
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| End bp | 5603789 |
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| Gene Length | 1446 bp |
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| Protein Length | 481 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 644932489 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT family |
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| Protein accession | YP_003089006 |
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| Protein GI | 255038385 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.134009 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAGAA ATTTCAAGCA TATATACGGT TTGCTATTCC CTGCAATCCT GATCACCGTA
TCGGGTTGTA AACTGACGCA ACCCGTCGAG CAGCGCGCAC AGATCAAAAC ACCGGAAACC
TTCGCGGGGC AGGCCGATTC CACGGGCGTT GCTTCGCTGC AATGGAAAAC GTTCTTCAAC
GACCAGCACC TGGTCGCGTT GATCGACACC GCTTTGCAGA ACAACCTCGA CCTCAAAATG
GCCGTCCAGC GCATTGAAAT GGCCAGAACC AACATCATGA TCGCCCACGG CGCAATGCTA
CCCTCCGTGA CCGGCGATGT GTCGGGCGGC GGTCGCAAGT TCGGGGATTA CACGATGGAC
GGCGTAGGTA ACTATGATAC CAACTTCTCC AGCAATCTCG ACGACGACCG GCGTCTCCCC
GCCCCTTTCC TGCCCGATTA CTTCCTGGGG TTGAGAAGTT CGTGGGAAAT TGATATTTGG
GGTAAACTCA AAAACCAGAA GAAAGCTGCA TACACGCGTT TCCTGGCAAG CGAAAAAGGC
CGCCAGGCGA TCGTAACCGG CCTGATAGCT GAAATCGCAC GTTCCTACTA CGAATTGCTG
GCGCTGGACA CCGAATTGGA CATCATTCAG AAGAACATCG ACTTGCAGGA ATCGGCGGTA
GAAACGATCA AAATCCAGAA GGAAGCCGGC CGCGCCAACG AACTCGGCGT GCAGCAGCTT
ACGGCACAGT TACTCAACAC GCGCAGCCTG GAATACGAAG TGCGCCAGCA GGTGGTTGAA
ATCGAAAACA ATGTAAACCT GCTCGCAGGC CGTTTCCCGC AGCCTGTTAC GAGAAGCAGC
GCTATGGGGC AGGCCGTTCC ACAGTCGATC AGCGCTGGTG TACCGGCGCA AATGCTGCGC
AGAAGACCAG ACATCCAGCA GGCCCAGCTG GAACTGCTCG CGAACTATTC CGAACAGCAA
GCCGCTCAGT TGGCGCTGCT CCCGTCGCTG AACATTACGG CTTTTCTGGG TTTCAATGCA
TTTAAAAGTA ACCTGCTCTT CTCGTCGGGA TCTCTCGCGT ACAGCGCCCT CGGCGGCCTC
ACCGCCCCGC TGATCAACCG GAAGGCATTA AAAGCCGGAC AAAAACGCGC CGAAGCCGCC
AGCCTGGAAG CGCTTTACGC CTATAACAAA TCCGTTCTGA CTGGTTTCAG CGAGGTAAGC
ACGAGCCTGA AAAAGCTGGA AAACACCCGC GAAATCGGCG AGCTCAAAAG ACAGGAAGTG
GAAGTACTCC AACAAGCCGT CGCCACGTCA CAAGACCTGT TCCTGACCGG CTATGCTTCC
TACCTCGAAG TAATCACCGC CCAACGCGGC GTGTTGCAGG AAGAGCTGAA CCTCACGAAT
GTTCAGAAGG AACAATTTCT GGCATTGGTC GAGCTGTACC GGGCTTTGGG AGGTGGCTGG
GAATAA
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| Protein sequence | MKRNFKHIYG LLFPAILITV SGCKLTQPVE QRAQIKTPET FAGQADSTGV ASLQWKTFFN
DQHLVALIDT ALQNNLDLKM AVQRIEMART NIMIAHGAML PSVTGDVSGG GRKFGDYTMD
GVGNYDTNFS SNLDDDRRLP APFLPDYFLG LRSSWEIDIW GKLKNQKKAA YTRFLASEKG
RQAIVTGLIA EIARSYYELL ALDTELDIIQ KNIDLQESAV ETIKIQKEAG RANELGVQQL
TAQLLNTRSL EYEVRQQVVE IENNVNLLAG RFPQPVTRSS AMGQAVPQSI SAGVPAQMLR
RRPDIQQAQL ELLANYSEQQ AAQLALLPSL NITAFLGFNA FKSNLLFSSG SLAYSALGGL
TAPLINRKAL KAGQKRAEAA SLEALYAYNK SVLTGFSEVS TSLKKLENTR EIGELKRQEV
EVLQQAVATS QDLFLTGYAS YLEVITAQRG VLQEELNLTN VQKEQFLALV ELYRALGGGW
E
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