| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_4634 |
|---|
| Symbol | |
|---|
| ID | 8228240 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 5595711 |
|---|
| End bp | 5597840 |
|---|
| Gene Length | 2130 bp |
|---|
| Protein Length | 709 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 644932483 |
|---|
| Product | carboxyl-terminal protease |
|---|
| Protein accession | YP_003089000 |
|---|
| Protein GI | 255038379 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0793] Periplasmic protease |
|---|
| TIGRFAM ID | [TIGR00225] C-terminal peptidase (prc) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.0425581 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGT ATCTTATCAC TCTTATTCCG GTTGTGTTGC TGGGTTGGCA GCGGGGCCCT
GTTCAGGAAC GAGTGGGGGC AATGGCACCA GCGGCCGCTT CCATGGATGA AGATATCAAG
CCGATTCCAG CGCAATACAA AGCGGAGGAG CTGACAACGA GGATCTTATC CAGCTATCAT
TATAGAAAGA CGAAGCTGAA TGACTCACTG TCGGCAGCCA TGTTTGATAA GTACCTTGAT
GCGATAGACC ACGGAAAGCT TTATTACCTG GCTAGCGATA TCGCGGAATT CGAGCAGTAT
AAGAACTCTT TCGATGATTA TTTGCAGAAA AGAGAACTCG ATGTCCCTTT TCAGATCTAT
AACGTGTTCA GAAAGCGCTA CAAGGAGAGA AGTGAGTACA TCCAGACGTT GCTGAAAGAC
ACGAAGCCAT TCGACTTCAG CGAGGATGAG TCGATGAACA CCGACCGCGA AAAGGCGGCC
TGGGCTAAAA ACACCGACGA GCTGAACGAC ACCTGGCGGA AGTACCTGAA AAGCGAGGCA
TTAGACCTCA AACTGTCGGG CAAAGCGGAC ACTGCGGTAG TAACCACGCT CCGCGACCGT
TATAAAACCC GCGACCGTGC ATTGGGACGC ATTCGCACCG AGCAGGTATT CCAGATGTTC
ATGAACGCAT ATGCCGAGTC GCTCGACCCG CATACGAGCT ACATGGCGCC AACTTCGGCC
GATCGTTTCA AACAGGAAAT GAGCCAGTCG CTGGAAGGCA TCGGTGCATT ACTTCGTGAG
GAAGATAATT ATATCAAAAT CGTAGAGGTA ATCCCTGGCG GACCGGCATT CAAAGGAAAA
CAGCTGAAAA AAGAAGATAA AATCGTGGCT GTGGCGCAGG GCGATGAAGG CAAGTTCGTC
GATATTGTCG GCTGGTTTGT GGACGACGCC GTGAAGCTGA TTAAGGGCCC AAAATCGACC
GTGGTACGTT TGCAGATCAT TTCTGCCGAT GCATTGCCAG GTTCGCCCCC CAAAGAATAC
CGTCTCGTTC GCGAGAAGAT TAAGCTGGAA GAACAGCGCG CGAAGAGCGA GATTGTATCT
ATCAACAGCG GAAACAAGGC TTACAAAATC GGGGTGATTG ACATCCCATT GTTCTACCGC
GATTTCGAGG GGGCGCAGCA TCGCGAGAAG GAGTTTTCAA GCACTACCCG AGACGTGCAG
AAACTGATCA CTGAATTGCA GGCGTCGAAT GTGGACGGGG TCGTGATTGA CCTGCGTAAC
AATGGAGGCG GCTCGCTTAC GGAGGCCGTT TCGCTCACAG GCTTGTTCAT CAACCGCGGA
CCGGTGGTTC AGGTGAAAGA AAGTCAGGGA GAGATCGAAG TGCAATCGGA CAACGACCCG
AGCATTGCCT ACGACGGCCC GCTGGCTGTG ATGGTAAACC GTTTCAGCGC ATCGGCATCT
GAAATCTTCG CTGCCGCGAT CCAGGATTAC AAACGCGGCC TTATCGTAGG TGAGCAAACC
TACGGCAAAG GAACCGTTCA AACACTGATC GACCTGAACC AATGGGTGCC GAAAGAGCAA
GATCAACTAG GCCAGGTGAA ACTGACCGTA GCGAAGTTCT ACCGCATTAA TGGCAGCAGT
ACGCAGCTGA AAGGCGTCAT GCCGGACCTG GAACTGCCCA CTGCATTCAA AGTAAATGAA
TACGGCGAAG GCTCGCAGCC AAGCGCACTG CCCTGGGATC AGATTCCTTC GTCGCGCTAC
GAAGTGGCAA CGAATATCAA TCCCAAAATC GTGGATCAAA TCCGCGACAA ACACAAGCAC
CGCCTCAGAA CCGACGAGGA ACTGAAAACG CTGGTTAAAA CACTCGACGA TTTCAAACAG
GCACGTGAGA ACAAAATCGT GTCCTTGCAA GAATCCAAAC GGAAAGCGGA GCGTGAAGAA
GCTGAGAAGA AGCGCGCAGC AATGAAGCAG CTCGGCGAGG ATAACGTGGA CGGCGACGAA
GAGGAAGAAA CCGATTCAAA AGTAGCCGAA GCGCCGAAAG ACGTGAAGAA GAAAAAGGAT
ATTTACCTCA CTGAAACCGG CCGGATTTTG GCGGATCTGA TTGTGATCTC GAAGGAGCCT
AGCCTGGCGG GGACTAAGAA GAAGCAGTAA
|
|---|
| Protein sequence | MKKYLITLIP VVLLGWQRGP VQERVGAMAP AAASMDEDIK PIPAQYKAEE LTTRILSSYH
YRKTKLNDSL SAAMFDKYLD AIDHGKLYYL ASDIAEFEQY KNSFDDYLQK RELDVPFQIY
NVFRKRYKER SEYIQTLLKD TKPFDFSEDE SMNTDREKAA WAKNTDELND TWRKYLKSEA
LDLKLSGKAD TAVVTTLRDR YKTRDRALGR IRTEQVFQMF MNAYAESLDP HTSYMAPTSA
DRFKQEMSQS LEGIGALLRE EDNYIKIVEV IPGGPAFKGK QLKKEDKIVA VAQGDEGKFV
DIVGWFVDDA VKLIKGPKST VVRLQIISAD ALPGSPPKEY RLVREKIKLE EQRAKSEIVS
INSGNKAYKI GVIDIPLFYR DFEGAQHREK EFSSTTRDVQ KLITELQASN VDGVVIDLRN
NGGGSLTEAV SLTGLFINRG PVVQVKESQG EIEVQSDNDP SIAYDGPLAV MVNRFSASAS
EIFAAAIQDY KRGLIVGEQT YGKGTVQTLI DLNQWVPKEQ DQLGQVKLTV AKFYRINGSS
TQLKGVMPDL ELPTAFKVNE YGEGSQPSAL PWDQIPSSRY EVATNINPKI VDQIRDKHKH
RLRTDEELKT LVKTLDDFKQ ARENKIVSLQ ESKRKAEREE AEKKRAAMKQ LGEDNVDGDE
EEETDSKVAE APKDVKKKKD IYLTETGRIL ADLIVISKEP SLAGTKKKQ
|
|---|
| |