| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_4611 |
|---|
| Symbol | |
|---|
| ID | 8228217 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 5573033 |
|---|
| End bp | 5574316 |
|---|
| Gene Length | 1284 bp |
|---|
| Protein Length | 427 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 644932460 |
|---|
| Product | xylose isomerase domain-containing protein |
|---|
| Protein accession | YP_003088977 |
|---|
| Protein GI | 255038356 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4952] Predicted sugar isomerase |
|---|
| TIGRFAM ID | [TIGR02629] L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.28145 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATCG AACAATATCA AATCGACCAG CACAACGACA GCCTCTTTTC GCGGCATAAC
AACCAGTACA TCTTCCTGCA AGAGCAGTTG GGCGAGCAGG GCATTCATGC CAAAGACATT
GTAAAGCAGC TTGAAGCATT TCAGGTGGCG ATCCCGAGTT GGGCATTGGG CACCGGCGGC
ACGCGCTTCG GCCGTTTTTC AGGTGTAGGC GAGCCGCGTT CGTTGGAAGA AAAAATCGAA
GATGTGGGCC TGCTGCACGC ATTGAACCGT TCAAGCGGCT CTATCTCACT GCACATTCCT
TGGGACATTC CCGGCCAGGC TCAGCCCATT ATCGACCTCG CCACCTCGCT GGACCTGAAA
TTCGACGCCG TTAATTCCAA CACATTCCAG GACCAGAAAG ACCAGGAGCT TTCTTACAAA
TTCGGCTCGC TCTCGCATGT GGACGCCAAC GTGCGCAAGC AGGCGGTGGA GCATAATATC
GAAGTGATCA AGCACGGCGT GAACCTGGGT TCCAAAGCCT TGTCGATCTG GCTTTCCGAC
GGCTCCTGCT TCCCCGGCCA GTCGAATTTT GTAAGAGCAT TCCAGAACAC GCTCGAATCT
TTGCAGGAAA TCTACGCCGC ATTGCCCGAC GACTGGAAGG TTTTCGTAGA ATACAAAGCC
TACGAGCCGA ATTTCTATTC AACCGTCATT CAAGACTGGG GCAGCTCGCT GCTTTTCTGC
CAGAAACTCG GCCCGAAAGC GGATGTACTC GTGGATCTGG GCCACCATTT GCCGAATGCG
AACATCGAGC AGATCGTAGC GACATTGATG ATGGAAGGCC GCCTCGCAGG TTTCCATTTC
AATGATTCAA AGTATGGTGA CGATGATCTA ACGGTAGGCG CCATTCGGCC TTACCAGCTC
TTCCTGATCT TCGTGGAGCT CGTGGAAGGC ATGAAACGCG CCAACCGCGC CGCCGATACT
TACGCATGGA TGATCGATGC GAGCCATAAT GTGAAAGATC CGCTGGAAGA TTTGCTGCAA
TCGGTGGAAG CGATATTGAT CGCGCAAGCC CAGGCATTGC TCGTCGATCG CAAGAAACTG
GAACAGGCCC GCAACGAAAA CGACGTGGTA TTGGCCCAGC AAATCCTGCA AAACGCATTC
CGCACCGACG TGCGCCCGCT CGTGCGCGAG GCTATGCGCC TGAGCGGCGG CTCCCTCGAC
CCGATTGGTT TGTACCGCCA CCTGGGTGTG CGCAACGAGC TGCTCAACGA GCGCGGGAAG
TTGACGGTCG CGACAGGACT TTAA
|
|---|
| Protein sequence | MKIEQYQIDQ HNDSLFSRHN NQYIFLQEQL GEQGIHAKDI VKQLEAFQVA IPSWALGTGG
TRFGRFSGVG EPRSLEEKIE DVGLLHALNR SSGSISLHIP WDIPGQAQPI IDLATSLDLK
FDAVNSNTFQ DQKDQELSYK FGSLSHVDAN VRKQAVEHNI EVIKHGVNLG SKALSIWLSD
GSCFPGQSNF VRAFQNTLES LQEIYAALPD DWKVFVEYKA YEPNFYSTVI QDWGSSLLFC
QKLGPKADVL VDLGHHLPNA NIEQIVATLM MEGRLAGFHF NDSKYGDDDL TVGAIRPYQL
FLIFVELVEG MKRANRAADT YAWMIDASHN VKDPLEDLLQ SVEAILIAQA QALLVDRKKL
EQARNENDVV LAQQILQNAF RTDVRPLVRE AMRLSGGSLD PIGLYRHLGV RNELLNERGK
LTVATGL
|
|---|
| |