| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_4496 |
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| Symbol | |
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| ID | 8228099 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | + |
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| Start bp | 5425368 |
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| End bp | 5428463 |
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| Gene Length | 3096 bp |
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| Protein Length | 1031 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 644932342 |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_003088862 |
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| Protein GI | 255038241 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.567286 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCCAAA ATCTATCCAA AAGCTCTCTG TTGAGCAGAG GCCGGCTACT TGTGGCTTTG
CTGCTCTTCG GCCTCAGCGC CGCCGCCCAG AACATCACCG TGAAGGGCAC CGTTACGTCC
ACAACTGACA ACGGCTCGCT GCCGGGTGTC AATATTGTGG TCAAAAACAC ACTCATCGGG
ACTTCCACCG ATGTCGATGG TAAATTCGAG ATCGATGCAC CGTCCGACGG CACCCTTGTT
TTCTCCGGGA TCGGGTACGT TACCCAGGAG GTTTCGGTGA ATGGCCGTGC TACGATCGAC
ATTAAACTCG CTGCCGACAC GAAGCTGCTC GAAGAAGTGG TCGTGGTCGG TTATGGCACG
CAGAAACGCA ATGCGCTCAC CAACTCGGTT TCGCAGATCA GCGGCGAAGC GATTACCAAA
CGGCCGGTAT CAAATATCCA GCAGTCGATG CAAGGGCTCA TGCCGGGGGT AACCGTGCTC
GATGCGGGCG GCTCGCCGGG TAAATCCAAT ACCAACATCC GCGTGCGCGG GATCACCACA
TTCAACATTA ACGGCAGCAG CACCAGCGGC TATGATCTGG GTAAAAACGA CGCATTGGTG
ATCGTTGACG GCATCGAGCA GCGCCTGAGC GACATTAACC CGGACGATAT CGAGTCGATT
TCCGTGTTGA AAGATGCCTC TTCGACGGCC ATTTACGGTT CGCGCGCAAC GAACGGGGTA
GTGCTTGTTA CCACCAAGCG CGCGAAAGGC GGCAAAGTGC AGGTGGATTA CCACGGCTAT
TATGCCATTC AAAAATCGAA CAATGTGCCC AAAATGATGG GAATCGAGGC TTACATGCGC
GAGCAGGTGG CCGCATACAC GAATGCAGGC CTGGCCGTGC CGGCGCGTTT TACGGAAGAA
TCCATTCAGG CGTACGTGAA TGCGACCGAC CGGGAAAAAT ACCCGATGCC GAACACCTGG
TTTGAGACCA TGCTCCGCTC GGCGCCCCAG CAGAACCACA CCATTTCGGT AGCCGGCGGC
ACGGACGTGA TCCGCACGCG ACTCAGCGCC CGTTTCCAGG ACCAGCAGGG TGTGATTGCG
GGTTATTCCA ACAAAATCGG CGAATTTCGG TTGAATACCG ATTATAATGT CTCGAAACGC
ATTCGCGTGA GCGGCGACAT CAACTACCGC TATGCCCGCG CATTGAACCC GACCGTCAAC
AACAACCCGA ATAACCCAAC GCCGCTGAAC AACTTCTTCC ATGGTACACT GTGGGCAGTT
CCCAAATACC CGGATGGTAC TTACGGACTG AGTACGCAGG GTAATAACCC ACTGATGTTT
AACGAAATAG GCGGCCAGTC CCGGCAGGTG ACGGATTATC TGGCGGGTTA TCTCAAAGCG
GAGTTCGACA TTGCAGAAGG GCTGACTTTC TCGACCCAGA TCGCAGGCCG GGGCACATTT
GTGAACCAGA AAAACTATAC GAATTCCTAC ACCAACACCG ACAAAAACAC GAATGTTACC
AAAACGGTGG CCATTAACTC GCTCACCGAA GTGCGCAACA CGCTGCGCGA ATACACGATC
AACAACCTGC TTAACTATGA AAAAAGCTTC GGCAATCATG GTTTGAAGGC ATTGGTGGGC
TATTCGCAGA TCGGCAACAC GCAGACTTTC CTGTCAGCCT ACCGCGAGCG GTTCTATAAC
AATGATATCG GCTCGATTGG CCAGGGCGCG AATGATGGCA CGAAGAGCAA CACCGGCAAC
GATGCGGAAT ATGGCCTGCG CTCCTATTTC GGCCGGGTAA ATTATGATTA CAAAGAGAAA
TACCTCTTCG AAGCGAATGG CCGCTATGAC GGTTCTTCGA AGTTCACCGG GCCGAAACAA
TACAGTTTTT TTCCCTCATT CTCAGCCGGA TGGCGCATTT CGAAGGAAAG CTTCTGGCAG
GGAATGGAAA AGTCGGTCAA CGACCTGAAA CTACGCGGCT CGTGGGGGAT CACGGGTAAC
CAGTCGGTGG ACCTGTACAG CTACTACTCC GCATTGACGG CCCTCGGGTA CAGCTTCGGC
GGCACGCCGG TGCAGGGTTA CCGCCCCACC ACATTGGCCA ACACGGGACT CGGCTGGGAA
TCTACCACGC AGCTCGACCT CGGTATCGAC GCCGCGTTCC TCAACAAGCG CCTCACGTTT
ACCGCCGATT ACTACCGCAA ACTCACCGAC GACATTCTCC TGAACCTCGA CATTCCGGCC
ACGATCGGTC TGAAAGCGCC GCCGCAGAAT GCAGGATCGG TCGAAAACAA AGGATGGGAG
TTCAGCCTCA ATTATCGCAG CGCATCCAGC TCATCGGGCT TCCGGTACAC TTTGGGTGGA
AATTTGAGTA TTAATGAAAA CAAAGTAACC GACCTGAAAG GCACTGGTCC GTACATCACG
GGTTCCGACA TCGACCCGCG CTACATTATC GCCAAAGGCC TGCCGATCAA CACGCTTTGG
GGTTATCAAA CGGACGGCTT GTTCCAGACC GAGCAGGAAA TCGCTGAATA CAAAGCCACT
TACGCCGCCA ACACCAAGCC CGGCGACGTG AAATATGTGG ATCGGAATGG TGACGGCAAA
ATCAACGCCG ACGATATGAC CGTGATTGGT AACTCGTTCC CGAAATACAC ATTCGGGGTG
AATGGTGATT TTGCTTACAA AGGCTTCGAA CTGAGTATCT TATTCCAGGG AGCGGCGAAA
GTGGATGCCC GCCTGGCCGG TGCATTAGCG GAAATGGGTA ACCAGGAAGG CTTCACCCAC
GAGATTTATA CCAATAATTA CTGGACGCCG GAAAATACCG GTGCGCGTTT CCCGCGCCCG
ACCAAATTCG ACCTTCGCAA CGTCGCCACT TCCGACCGTT TGGTAATTGA TGGCTCTTAT
TTGCGCCTCA AAAACGTTCA GCTCGCCTAT AACATTCCGT CCGAAATGGT GAGCAAACTG
CGCGTGAGCC GCATCCGGGT TTACACCTCG GCTACCAACC TGCTCACTTT CTCGAAGCTG
AACGAATGGA ACCTCGACCC GGAAGTGCCA TCCGGCCGCG CCGTGTATTT CCCGCAAACA
GCCTTGTACA CATTCGGCTT GAACCTCTCA TTCTGA
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| Protein sequence | MFQNLSKSSL LSRGRLLVAL LLFGLSAAAQ NITVKGTVTS TTDNGSLPGV NIVVKNTLIG
TSTDVDGKFE IDAPSDGTLV FSGIGYVTQE VSVNGRATID IKLAADTKLL EEVVVVGYGT
QKRNALTNSV SQISGEAITK RPVSNIQQSM QGLMPGVTVL DAGGSPGKSN TNIRVRGITT
FNINGSSTSG YDLGKNDALV IVDGIEQRLS DINPDDIESI SVLKDASSTA IYGSRATNGV
VLVTTKRAKG GKVQVDYHGY YAIQKSNNVP KMMGIEAYMR EQVAAYTNAG LAVPARFTEE
SIQAYVNATD REKYPMPNTW FETMLRSAPQ QNHTISVAGG TDVIRTRLSA RFQDQQGVIA
GYSNKIGEFR LNTDYNVSKR IRVSGDINYR YARALNPTVN NNPNNPTPLN NFFHGTLWAV
PKYPDGTYGL STQGNNPLMF NEIGGQSRQV TDYLAGYLKA EFDIAEGLTF STQIAGRGTF
VNQKNYTNSY TNTDKNTNVT KTVAINSLTE VRNTLREYTI NNLLNYEKSF GNHGLKALVG
YSQIGNTQTF LSAYRERFYN NDIGSIGQGA NDGTKSNTGN DAEYGLRSYF GRVNYDYKEK
YLFEANGRYD GSSKFTGPKQ YSFFPSFSAG WRISKESFWQ GMEKSVNDLK LRGSWGITGN
QSVDLYSYYS ALTALGYSFG GTPVQGYRPT TLANTGLGWE STTQLDLGID AAFLNKRLTF
TADYYRKLTD DILLNLDIPA TIGLKAPPQN AGSVENKGWE FSLNYRSASS SSGFRYTLGG
NLSINENKVT DLKGTGPYIT GSDIDPRYII AKGLPINTLW GYQTDGLFQT EQEIAEYKAT
YAANTKPGDV KYVDRNGDGK INADDMTVIG NSFPKYTFGV NGDFAYKGFE LSILFQGAAK
VDARLAGALA EMGNQEGFTH EIYTNNYWTP ENTGARFPRP TKFDLRNVAT SDRLVIDGSY
LRLKNVQLAY NIPSEMVSKL RVSRIRVYTS ATNLLTFSKL NEWNLDPEVP SGRAVYFPQT
ALYTFGLNLS F
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