Gene Dfer_4471 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_4471 
Symbol 
ID8228074 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp5399162 
End bp5399872 
Gene Length711 bp 
Protein Length236 aa 
Translation table11 
GC content45% 
IMG OID644932317 
ProductRNA polymerase, sigma-24 subunit, ECF subfamily 
Protein accessionYP_003088837 
Protein GI255038216 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.368795 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCAGCA CTTACACACG GACCGGGGCA CCAAAGATTC CACCTTCTCT GCTGATATCT 
TTTTCGTACG GAAACGCGGC TATAATTTGT TACAGTCCGT CGAGCCATAC CGGAAATTTT
ATTAGATTGC CAGTAAGTAA TTTACAATTA ACTATTAAGC AACTCTTGGC GACCAGCAAG
GTAAAATACT CGGAAGAGGA ATTGGTGTCA GCTCTGAAAA AAAACGAGCG AAACGCCTTT
GAATTCCTGT ACGACCATTA CTCAGGAGCT TTGTTTAATA TCATTTCAAA GACGTTGAGG
GACGAGGAGA AAGCCGCAGA TGTGTTACAG GAATGCTTTC TTAAGATTTG GAAAAATATA
GAATCCTATA ATCCGGAGAA AGGACGATTG TTTACATGGA TTATGAATAT CGCGCGGAAC
GGTGCGATAG ACGCAGTCAG GGCGGAGGGC CGGAAGCCGG CAATGGATGA TATTGAAAAC
ACGGTGGTCC TTAATGAGAA GGATACGTAC GAAGATTCAC AGACAATCAG TTCGGACATG
AAGGCGATTG TCGACATGCT CAGGCCCGAA CGGAAAATAC TCATCGACAT GGCCTATTTC
CAGGGCTACA CGCATGAGGA AATATCCGAA GAGCTCAGCA TTCCGCTCGG CACCGTGAAA
TCGCGCATCC GAACCGCATT ACAAGAGTTA AAACAATACT TTGCAGTATG A
 
Protein sequence
MSSTYTRTGA PKIPPSLLIS FSYGNAAIIC YSPSSHTGNF IRLPVSNLQL TIKQLLATSK 
VKYSEEELVS ALKKNERNAF EFLYDHYSGA LFNIISKTLR DEEKAADVLQ ECFLKIWKNI
ESYNPEKGRL FTWIMNIARN GAIDAVRAEG RKPAMDDIEN TVVLNEKDTY EDSQTISSDM
KAIVDMLRPE RKILIDMAYF QGYTHEEISE ELSIPLGTVK SRIRTALQEL KQYFAV