| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_4457 |
|---|
| Symbol | |
|---|
| ID | 8228060 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 5377750 |
|---|
| End bp | 5380650 |
|---|
| Gene Length | 2901 bp |
|---|
| Protein Length | 966 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 644932303 |
|---|
| Product | transcriptional regulator, LuxR family |
|---|
| Protein accession | YP_003088823 |
|---|
| Protein GI | 255038202 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3292] Predicted periplasmic ligand-binding sensor domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.547155 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATAGTGA ACACGGCGGC AAACCGACTC ATGAAAAGTC ATTTACCAGG CCGGGCCTTC
AAATATAAGG CGGGTTGCGG TACTGCCATA CTCTTTTTAC TCACAATCTT CCTCCCCTCC
CTGGCCCAGG AAACGCCCCC GCTGATCAAC TATCCGGCCA CACTTTACAA GGCCCATAAC
CAGAACTGGG ACATCTCCCA AAGCGCCGAC GACGTCATTT ATTCCGCCAA TTCCGACGGG
CTGCTGGAAC ACGACGGCGC TTCGTGGAAA CTGTACCCGT TGCCCGACGG CCAGATCGTC
CGCGCGGCAT TGTACGATGA ACAACCATCC GCTCCGGCCG GAGGAAAAGT CCTCAACCGT
ACCGCACAGG CCGAACAGCG CATTTACGTA GGCGGATTTT CGGAGTTCGG ATATTGGAAA
AAAGAACAGG ACGGCCAGCT GCGCTATTAT TCACTGAGCA AAAAAGCAGG TTTCGCCAGC
CTGCGAACCG AAGAGATCTG GCACATCCTC AAAACCCCGA AATACATCTA TTTCCAATCG
TTTTCAGTCA TCTATCGTTA CGACGGCAAA AACCTGAAAG AAATCAAGAG TCCCGGCAAT
ATCATGTTCA TGCGGTTTGT CCAAAACCGG GTACTTGTGC AATCGATCGG AAAGGGCATT
TATGAGCTAA AAGGCGAAAA ATTCGAACCC TTGCACGGCA CGGAAAGTCT CTCGCCCGCG
ATCGTCTCCT CGATCCTCCC CTTCCGCAAC GGCGGTATTC TCATTACAAC CACCAAAAAC
GGGCTGTACA TCTGGCAAAA CGGCACATTG ACGCCCTGGA CCATCGGCAT TTCCGGCGAG
CTGAAACGTA ACATCATCAA CCGGGCGATC GTCATGACCC GCGACAGCAG CCTGGTGTTC
GGTACGATAC AAAATGGGGT GTATGTAGTT TCAAAAAATG GGGCATTGCG CTACCAGTTC
AACAAGGAAA CCGGCCTGCA AAACAATACG GTGCTTGCGC TGAAAGAAGA TTCGCAACAA
CAACTATGGA TCGGGCTTGA TCAGGGCATT GATATGGTTA AAATGTCGTC GCCGATCATA
GCTTACCAAA CCAGCGACAA CCCGCTTGGC TCAACCTACG CGGCGGCGAT CTGGCACGGG
AAGCTGTATG TGGGTTCCAA CAAGGGAGTA TTTGTTAAAA AATGGCTCTC ACCCGAACCT
TTCCGGCCGG TATGGGGGCT CGAAGGCCAG ACCTGGGCGC TTAAAGTGAT CGACGGACAG
CTCCTGTGCG GCCACAATGA TGCTACCTAT CGCATTGAAG AAAACGGGGT TACCAAAATT
TCGAATATCA ATGGCGGCTG GGTGTTCCTT CCGGTGCGGA ACGGGCAGGA TACGCTTTTA
CTGCAAGGCG CCTATGTGGG ATTGCACGTG TATAAAAAAG ATGCAAAAGG CATCTGGACC
TACGCCTACC CCGTCAAAAA CTCGGTACCG ATCCCGATCC GGCAGATCGT GCGCGACCGT
TCGGGGGCAT TCTGGCTCGG GCATGCTTAC AAAGGACTGT TTCAAACCAA ACTCACTCCC
GCCCTCGATT CGGCATACCA ATGGAAGGAA TTTAAAGCGC CGCAGGAACT GCCCAGTGAA
TTTTCGGTGG AGGTGGTGCA ATGGCTGAAT GGGCAGGTAC GCGTCCGTTC CGGCAACGCG
TTTTTCCAGC CCGATGCCTT CGGGAAGCTC GTAGCGAGCC AGGATTTTTC GAAAGAAGAG
GAAAACTATA AAGTAAGGAC CGGCCTGCAT GGCGACTGGT TCAAGGTGTT CATGAACCGC
GTCGTATTTT ATCAACCGGG GAAAGAAACG CGGAGCCTTC CGCTCACGCT CGTGCGCAAC
AGCGAAACCG TGGTGCCGCT TTCGGAAGAT TACTATTTCT TTTGTCTCGA CAATGGCTAT
GCACTATACA ACCGCAAATC ACCCGACAAG CACAACGACG ACGACGGCGC GCCGGTGATC
CGGAAGGTCG CCAACCTGCG CAATCTGAAC GAGACATTCG CCATTTCGGG CAGCCCGTCG
CTTCCCTCGG AAGTGCGTGC ATTGCGGATC GCGTTCGCAT TGCCGGTGTA CGGGCAGAAC
GTACAATACA AATACCGCCT CAAAGGACTT ACCGATCAAT GGTCGGAATG GACGGACCAG
AGCTTTGTGG AATTCACCAA CCTCGAATCG ACCGACTACA TTTTCGAGAT CCGCAGCAGC
CTTAATGATA CAATCGCGAC CTATCATTTT AGCGTAAAAC CTTTCTGGCG CGAAACCTTG
CTTGCTAAAA TCCTATTCGC CGTGGTGATT GCGCTGGCCC TCGCTGCGCT GATCGTGTAT
CAGGAAAAAC GCCTGACGCG CCACCGCCGG AAGCTGATTG AGGAGCAGGA AGAAAAGCTG
CGGCAGCAAC GGCTGTCGAG CGAGCGGCAG ATCATGCAAA TCCAGAACGA GAAATTACAA
AGCGAAATCC AGAGCAAAAG CCAGCAGCTA TCCAATGTGG CCATTAACGT GGTTAAGAAA
AACGAAATCC TGGAAGAAAT CCGCGACGAG CTGAAACAGG TGAAAGCCGA CATGGGGCAT
CAACTCCCCA ACATCCATTA CCAGAAATTA TTGAACAGTA TCGAACGCAA CGTCGCCGGC
AAGGACGACT GGGTTTTGTT CGAACAGAAC TTCGACGAGG TACACGAGCA CTTTTTCAAA
CGGCTCCGTC AGATTTATCC TACCATCTCC CCTTCCGAGC TGCGGCTCGC GGCATGCCTT
CGCATGAATC TTTCGACAAA GGAAATGGCG CCCGTGCTGG GGATTTCCGT CCGCGGTGTG
GAAATCAAGC GCTACCGCCT CCGCAAAAAG CTGGATTTGG ACAACGATGC GAACCTGGCC
CAATTTATGA TGGACATCTG A
|
|---|
| Protein sequence | MIVNTAANRL MKSHLPGRAF KYKAGCGTAI LFLLTIFLPS LAQETPPLIN YPATLYKAHN
QNWDISQSAD DVIYSANSDG LLEHDGASWK LYPLPDGQIV RAALYDEQPS APAGGKVLNR
TAQAEQRIYV GGFSEFGYWK KEQDGQLRYY SLSKKAGFAS LRTEEIWHIL KTPKYIYFQS
FSVIYRYDGK NLKEIKSPGN IMFMRFVQNR VLVQSIGKGI YELKGEKFEP LHGTESLSPA
IVSSILPFRN GGILITTTKN GLYIWQNGTL TPWTIGISGE LKRNIINRAI VMTRDSSLVF
GTIQNGVYVV SKNGALRYQF NKETGLQNNT VLALKEDSQQ QLWIGLDQGI DMVKMSSPII
AYQTSDNPLG STYAAAIWHG KLYVGSNKGV FVKKWLSPEP FRPVWGLEGQ TWALKVIDGQ
LLCGHNDATY RIEENGVTKI SNINGGWVFL PVRNGQDTLL LQGAYVGLHV YKKDAKGIWT
YAYPVKNSVP IPIRQIVRDR SGAFWLGHAY KGLFQTKLTP ALDSAYQWKE FKAPQELPSE
FSVEVVQWLN GQVRVRSGNA FFQPDAFGKL VASQDFSKEE ENYKVRTGLH GDWFKVFMNR
VVFYQPGKET RSLPLTLVRN SETVVPLSED YYFFCLDNGY ALYNRKSPDK HNDDDGAPVI
RKVANLRNLN ETFAISGSPS LPSEVRALRI AFALPVYGQN VQYKYRLKGL TDQWSEWTDQ
SFVEFTNLES TDYIFEIRSS LNDTIATYHF SVKPFWRETL LAKILFAVVI ALALAALIVY
QEKRLTRHRR KLIEEQEEKL RQQRLSSERQ IMQIQNEKLQ SEIQSKSQQL SNVAINVVKK
NEILEEIRDE LKQVKADMGH QLPNIHYQKL LNSIERNVAG KDDWVLFEQN FDEVHEHFFK
RLRQIYPTIS PSELRLAACL RMNLSTKEMA PVLGISVRGV EIKRYRLRKK LDLDNDANLA
QFMMDI
|
|---|
| |