| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_4320 |
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| Symbol | |
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| ID | 8227923 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | + |
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| Start bp | 5236040 |
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| End bp | 5237104 |
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| Gene Length | 1065 bp |
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| Protein Length | 354 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 644932167 |
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| Product | riboflavin biosynthesis protein RibD |
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| Protein accession | YP_003088687 |
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| Protein GI | 255038066 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0117] Pyrimidine deaminase |
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| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.0046845 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAGACGG ACAATCAATG GATGGAGCGG GCATTGCAGC TCGCCGGATA CGGCCGCGGG
GCGGTAAGCC CCAACCCGAT GGTGGGCTGT GTGATCGTTC ATGACGGCCG CATTATCGGC
GAAGGCTGGC ACCGTGCATA CGGCGGGCCG CATGCGGAAG TACGCGCGAT CGAGGATACG
GACGCGCGCG GCAATTCGCA TTTACTGCCA CAAGCTACCG CCTACGTAAC GCTGGAACCG
TGCTCGCACA CGGGAAAAAC GCCTCCCTGC GCCGACCTGC TCGTGAGCCG GCGCCTGAAA
AGAGTGGTGA TCTGCAACAA CGACCCGAAT CCGCTGGTTT CCGGCAGGGG TATCCGCCGC
CTGCGCGAGG CGGGCATCGA AGTGGAATGC GGCGTGGCCG AAGCCGCAGG GACGGAGCTG
AACAAGCGGT TTTTTACGGC GATGACGCTC CAACGGCCGT ATGTGATCCT GAAATGGGCC
GAAACCGCCG ATGGGTTCCT GGGTTACCAG GCCGGCAGCC CGTTGCAGAT CAGCGGCACA
TTGTCCAACA TGCGGGTGCA TCAGTGGCGT ACCGAGGAAG ACGCGATTAT GGTGGGTTAC
AAAACCGCGC TGATGGACAA CCCCCGCCTG AACGTCCGGC ATTGGGCAGG AAGAAACCCG
GTAAGGATCG TGACCGACCG ACATTTGCAA CTACCTCCGC AACTCCATTT GTTCGACCAA
TCCCAAAGCA CTGTCGTCGT CAGTTATGAT CTCGAAACGG ACATTCCGTC CGATCCGGAG
CGGTATTTGG CTCCGACAAC GGCCTACATG AAAATCGAGC CAAAGGTCGA AGAAATTCTA
CAAATTCTAC AAGGTTTACA CCGTCGGAAA GTACAATCCT TGCTGGTCGA AGGCGGCGCA
GCGGTGATTA ATGCGTTCTT CGAATGCGGT TTGTGGGACG AAATACGGCG TTGCCAGGGC
GGGATTACGA TCGGAAATGG CGTAGCTGCA CCTGCCCCCA AGGGGATTTT CAGGGGTTCT
GAGCGTGTTG GAGACGATTT GTGGACGTTT TACAGCAGGA TTTAA
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| Protein sequence | METDNQWMER ALQLAGYGRG AVSPNPMVGC VIVHDGRIIG EGWHRAYGGP HAEVRAIEDT
DARGNSHLLP QATAYVTLEP CSHTGKTPPC ADLLVSRRLK RVVICNNDPN PLVSGRGIRR
LREAGIEVEC GVAEAAGTEL NKRFFTAMTL QRPYVILKWA ETADGFLGYQ AGSPLQISGT
LSNMRVHQWR TEEDAIMVGY KTALMDNPRL NVRHWAGRNP VRIVTDRHLQ LPPQLHLFDQ
SQSTVVVSYD LETDIPSDPE RYLAPTTAYM KIEPKVEEIL QILQGLHRRK VQSLLVEGGA
AVINAFFECG LWDEIRRCQG GITIGNGVAA PAPKGIFRGS ERVGDDLWTF YSRI
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