| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_4298 |
|---|
| Symbol | |
|---|
| ID | 8227901 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 5210178 |
|---|
| End bp | 5212652 |
|---|
| Gene Length | 2475 bp |
|---|
| Protein Length | 824 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 644932145 |
|---|
| Product | TonB-dependent siderophore receptor |
|---|
| Protein accession | YP_003088665 |
|---|
| Protein GI | 255038044 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4773] Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid |
|---|
| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.742577 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGGATTA TTTATCTACT CATCCTTTCA CTTTTCTGCT CGCTCGCGTA TGCGCAAACG
GGCCAGATCA AAGGCAATAT TAAAAATGCC GCGGACCAGC CCGTGGAGGC TATCAACCTG
ATCCTCAAAG GAACCGGCAA AGGGACATTG ACCGACGCCG AGGGAAATTT CGAATTTAAT
GCATTGGCGC CAGGCCATTA TCAGCTCGTG GGAACGGGCC TGGGCATCCG GCGTATCGAC
CGTAACGTTC ACGTGAAGGC CGACGAAACC GTGAACCTGG AAATCGTTTC CGAAGAGAAT
GTACAGGAAT TGCAAACCGT CGAGATCATT GGTAACGGCG GGACAAGCTA TAAAAATGAC
CTTTCGTTCA TTGCGAGCAA AACCGCGACG CCGATCAAGG ATGTGCCGCA GGCTATATCT
TACATTACTA AGGAAGTAAT GCGCGACCAG GGCGTATTTT TGATGGGCGA CGCAGTGAAA
AACATGAGCG GTGTGAACCA GTTTACTTTT TATGACGATT TAACGATCCG CGGATTCCGT
ATGAACGGCG GCAGCACTAC CCAGCTCGTG AATGGCCTGC GCACTTTCTC AGGTTTCTGG
AAACAACCAC CGGTAAATTA CCTCGAACGC GTGGAAGTGA TCAAAGGGGC CGCATCGGCA
TTGTATGGCA ACACATCGCC AGGCGGGACG ATTAACCGCG TTACCAAAAA ACCGCTCGCA
ACGCCCCGGA AATCGTTGAG TTTCACGACC GGGAGCTTCA ATACGCTGCG TACGCTGGCC
GATTTTACCG GTCCGATGAA CGAGAGCAAA ACCCTGCTTT ACCGCCTGAA TTTGGGCTAT
GTGAATGCGC AGAACTTCCG GAATATGCAG TTTGATAAAA ATATCATCGT TGCGCCGTCG
GTATCGTTCC TGCCTACGAA TAAAACCCGC ATCAATTTCG ACCTGGTTTT CAACCGCTCC
AACAGCCGTC TCGACCGTGG CCAGTCGGTA AAAGGAAATG ACCTTTATTC CAGCTCTATC
CGCACTTCGC TCAATGCGGT GAATGATTAT CTCAATGAAG AAACCTACCT GATCACGACT
TCATTGAACC ACCAGTTTAC CGAAAACACG TCCTTCAACG TCGCCTACCT GCGCACCGGC
TACTCCGAAG ACCTGCTCGA ACACCGCAGC AGCAACGTGA ATGCCGTGGA TTCTGCCGGA
AAGCCGATCG AGAACCTGGT GGCGCGGCAG GTATTTGTGC GCAAGACGAA GTCGTTCATG
GACAACGTGT CGCTGTTTTT TAACCACAAT TTCAACACCG GCATTGTGGA GCACAAAATG
GTGGCGGGCT ATGACTTCAT CCAATCGTCG ACACCGAAAG GCTCCGGCCA GCAAACTGCA
AATGGTTACC TGCTCAAAGC GGGCGGCGCG GCGGCTTACA ATGCCAAAAC GCCCGAGAAA
TACGTGTTTT ACAACTATGT AGAAAACGGT GTGACTTACA GCATTCCGAA GCCGAACATC
TCGCACTACG ATATCACGCT GCAAAACAAC AACATGGAAG ATCCTTCCAA GTACATTTAC
AACGTGACGG CCAACTCGGC AACCACGCCG GTGCTGTACA AACTGCACGG CTTGTATTTG
CAAGAACAAT TGAAAATCAA GAAGTTGCAA ATCCTGCTCG GCTTGCGCTA TGATACTTAC
ATTGATAAGA AAGGCTACAC CACCAACAAC GAGCAGAATA TCACGCAGCA TGCGTTGCTG
CCGCGCATCG GGGCGGTGTA CTCGCTTACG AACAATATCA ATGTGTACGG AACTTATACC
AAAGGCTACA ACCCGCAAGA CCCGATCGTG CAAAGCAATC CGTTGTCGGG AGGGCCGTTT
GACCCGATCC GCAGCAGCTT GTCGGAAGCC GGTTTGAAAA CAGAATGGCT AGACGGCCGC
CTGACCGCAA ACGTGTCGGT TTACAAAATT ACGCAAACGA ACACATTGTA CTCTGCCAAT
GCCGCCGACC GTCCAGACCT GATGATCCAG GTAGGTAAAG AAGCTGCGAA AGGTGTGGAA
TTGGATGTTA CCGGGAACAT CTTGCCCAAC TGGAACGTGA TCGCGACTTA CAGCTACAAC
GACGCCAAGA TCACCGACGC CGGCTCCCGC GCCGCCGACC AGGTGCTCGT AAACTTGCAG
AAACCGAATG CCCCGAAAAA CCAGGGAAGC ATTTGGACTA AATACACATT CGTGAGTAAC
TTCCTGAATG GCTTCGGTGT AGGCCTCGGC GGGAACTTCG TTACGGAGCG TAACCTATCG
CTGAACAACA CGCAAACGCT GCCGGCGTAC ACCTTGCTGA ACGGCGCCGT TTATTACAAA
ATCGACAAAT TCCAGTTCCA GGTAAACCTC AATAACCTCG GCAACAAAAC GTATTGGGTA
GGCGGTTACG ATTACCTGCG CCTCTTCCCC GGCGCGCCGC GGAACTTCAT GGCGACTATT
TCTTACACCT TTTAA
|
|---|
| Protein sequence | MRIIYLLILS LFCSLAYAQT GQIKGNIKNA ADQPVEAINL ILKGTGKGTL TDAEGNFEFN
ALAPGHYQLV GTGLGIRRID RNVHVKADET VNLEIVSEEN VQELQTVEII GNGGTSYKND
LSFIASKTAT PIKDVPQAIS YITKEVMRDQ GVFLMGDAVK NMSGVNQFTF YDDLTIRGFR
MNGGSTTQLV NGLRTFSGFW KQPPVNYLER VEVIKGAASA LYGNTSPGGT INRVTKKPLA
TPRKSLSFTT GSFNTLRTLA DFTGPMNESK TLLYRLNLGY VNAQNFRNMQ FDKNIIVAPS
VSFLPTNKTR INFDLVFNRS NSRLDRGQSV KGNDLYSSSI RTSLNAVNDY LNEETYLITT
SLNHQFTENT SFNVAYLRTG YSEDLLEHRS SNVNAVDSAG KPIENLVARQ VFVRKTKSFM
DNVSLFFNHN FNTGIVEHKM VAGYDFIQSS TPKGSGQQTA NGYLLKAGGA AAYNAKTPEK
YVFYNYVENG VTYSIPKPNI SHYDITLQNN NMEDPSKYIY NVTANSATTP VLYKLHGLYL
QEQLKIKKLQ ILLGLRYDTY IDKKGYTTNN EQNITQHALL PRIGAVYSLT NNINVYGTYT
KGYNPQDPIV QSNPLSGGPF DPIRSSLSEA GLKTEWLDGR LTANVSVYKI TQTNTLYSAN
AADRPDLMIQ VGKEAAKGVE LDVTGNILPN WNVIATYSYN DAKITDAGSR AADQVLVNLQ
KPNAPKNQGS IWTKYTFVSN FLNGFGVGLG GNFVTERNLS LNNTQTLPAY TLLNGAVYYK
IDKFQFQVNL NNLGNKTYWV GGYDYLRLFP GAPRNFMATI SYTF
|
|---|
| |