Gene Dfer_4274 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_4274 
Symbol 
ID8227877 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp5178695 
End bp5179951 
Gene Length1257 bp 
Protein Length418 aa 
Translation table11 
GC content53% 
IMG OID644932121 
ProductFAD dependent oxidoreductase 
Protein accessionYP_003088641 
Protein GI255038020 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0665] Glycine/D-amino acid oxidases (deaminating) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones36 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCAAAAA AAGGCACCTC CGTCATCATT GGTGGCGGGA TTTCGGGTCT GGCTTCGGCC 
TATTATTTGC TTAAAAGCGG GTGGAAAGTG ACGTTGCTCG ACAAGGGCGA CCTGTTCGAT
AACTGCTCCA TCGGCAATGC GGGTATGATC GTGCCGAGCC ATTTTATTCC GCTTGCCGCG
CCGGGTATGG TTTCGAAGGG GATTAAATGG ATGTTCAACA GCCGCAGTCC TTTTTATGTA
AAACCTTCCC TCGATTTCTC GCTCATTTCA TGGGGTTTGA AATTCATGAA AGCGGCCACG
GAAGCCAATG TGGAACGCGC CGCGCCGCAT TTACGGGATT ATCATTTATT AAGTAAAAAA
CTCTACGAAG ACCTCGTCCG AGACGAAAAC CTGGACTACG GGCTGGAAGA AAAGGGCATT
CTAATGCTCT ACAAATCCGA TAAAACAGGC GAAGAGGAAA TTCACGTAGG CAAGCAGGGC
CAGCAACTCG GCCTGGATAT CGATATGCTC AGCCGCGAGC AGGTGCAGGC CTTGGAACCG
GGCATTCAAC TGGACGTTGC CGGCGCCGTG CATTACCGCT GCGACGCGCA TTTGTACCCG
ACGGCATTAG TAAAAGGTTT GATCCAAAGC ATTACACAGC TCGGCGCCGA AATTGTCACA
AACACCGAGG TGACCGGTTT TGACATTCAA AACGGGGAGA TCAAACGGGT GAAAACCGTC
GCCAAAACCT ACGAAGGCGA TCTGGTGGTG ATGACCGGCG GCTCGTGGCT GCCGCAATTG
GCAAAACAGG CCGGGTTGTC CATTCCGGTC ATGCCGGGCA AGGGTTATTC CTTCATGGAA
CCGAACTCGC AGCATCCCAT TGTTCATCCC GCTTTGCTTC TTGAAGCGCG TGTGGCCGTG
ACGCCCATGA ACGGACAGGT ACGCTTCGGC GGCACGATGG AACTCGCGCC GCTCAACAAC
CAGATCAATA TGAACCGCGT GGAAGGCATT GTGAACTCCA TCCCGAAATA TTACCCCGAA
CTAAACGTGG CCGTACCGCA AAAAGACCGC ATCTGGTACG GTTTCCGTCC TTGCTCGCCG
GATGGCTTGC CGTATTTGGG CTATTCCAAA AAGCTCAGCA ACCTGATCGT CGCCGGCGGT
CACGGGATGA TGGGCATCAG CCTCGGGCCT GGAACGGGTA AAATAGTTGC GGAACTGGCC
GAGCGTGCGA GACCTTCGGT TAACATAGGT CTGTACGATC CTGAACGGTA CCAGTAA
 
Protein sequence
MSKKGTSVII GGGISGLASA YYLLKSGWKV TLLDKGDLFD NCSIGNAGMI VPSHFIPLAA 
PGMVSKGIKW MFNSRSPFYV KPSLDFSLIS WGLKFMKAAT EANVERAAPH LRDYHLLSKK
LYEDLVRDEN LDYGLEEKGI LMLYKSDKTG EEEIHVGKQG QQLGLDIDML SREQVQALEP
GIQLDVAGAV HYRCDAHLYP TALVKGLIQS ITQLGAEIVT NTEVTGFDIQ NGEIKRVKTV
AKTYEGDLVV MTGGSWLPQL AKQAGLSIPV MPGKGYSFME PNSQHPIVHP ALLLEARVAV
TPMNGQVRFG GTMELAPLNN QINMNRVEGI VNSIPKYYPE LNVAVPQKDR IWYGFRPCSP
DGLPYLGYSK KLSNLIVAGG HGMMGISLGP GTGKIVAELA ERARPSVNIG LYDPERYQ