| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_4267 |
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| Symbol | |
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| ID | 8227870 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 5164373 |
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| End bp | 5167603 |
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| Gene Length | 3231 bp |
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| Protein Length | 1076 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 644932114 |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_003088634 |
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| Protein GI | 255038013 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0559903 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.145887 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAATA CCGATACCAA TCAATGGTTG CTCCAAATGC GGAGCATCCG TAATTCTCTA
TTGCTCCTGC CCGCGCTCGC AAGCCCTGTG ATTGTGAACG CAGCCCTCGC CAACTCCGGA
ACTGCTACTA CCATCCGCAT TGATAAAACC CTGAAAGGAA AAGTAACCGA CAAGGAAACC
GGCGATGGCC TTCCCGGTGT GAACGTGGTG GTGAAAGGAA CCAGCACCGG TACAACCACC
GACGGAGAAG GTAATTATAC ACTTTCCGTT CCTGATAATG CAACATTGGT TTTCAGCTTT
GTGGGCTACC TCAGCCAGGA ACTTCCCGTC GGAAACCGCA CCACCCTCGA CATATCACTT
GCTTCCGACT CCAAGGCGCT TAGCGAAGTA GTCGTGATCG GGTACGGTAC CGCGAAGAAA
TCCGACCTTA CCGGTTCCGT AGGTTCCGTG AAAGAAGAAC AACTCAGAGA ACGTCCGGCG
CCTTCATTGA ACCAGGCATT GCAGGGACGG GTTTCGGGTG TGCAGGTGAA CGTGAACTCG
GGTCGTCCGG GTGGTCGTGC CAATGTGCGT ATCCGTGGTT TCAGCTCTAT CAACTCATCC
AACAACCCGT TGTACGTGGT GGATGGTGTA ATGCTCCCGC AAGGTAACCA GAACCAGCAA
AGCCAGGCGA TCGACTTCAT CAACCCGAAC GACATCGTGT CGGTGGAGGT GTTGAAAGAT
GCGTCGTCGA CGGCGATCTA TGGTGCGCGT GGTGCCAACG GGGTGATCAT GATCACGACC
AAAAAAGGTA AGTCAGGCGA AAGCACTATT ACCTACGGTC TTGACCTGAG CGTACCGACC
GCCGGCCCTA AAAGAGCGAA AGTATTGAAC GCCCAGCAAT ATATGGACGT GGAAGACCTC
GCTTTCCGGA ACATGGAGAA GTTCGACAAG GCAGGCTGGG ACGCAGGTAA ATACAAAACC
CACGATCCGC TCGTACGTCG TGCACAGCTG GCAGCAGCCC ACCCCGACGT GTTCACCAAA
CGCGCGGACG GCACTTTTGC TCCCAACTAC GACACCGACT GGTTCAAAGA ATCGACCCAG
AACCGTGTGT CTCAAAACCA CCAGCTGGGT TTCAGCGGCG GTAATGAAAG AACTACCTAC
TCGCTGTCGC TCAACTACCG CGACGACCAG GGTCTCATCA AAACGTCTTA CCTGAAACGC
TATTCAACCC GTTTCAGCAT CGACGACCAG GTGAAAAAAT GGCTGCGCCT CGGAGGTACT
TTGAGCTACA ACAACCAGGC TGAAAACCTC GTCGATATCA ACGACGCCGT GCCTCGCCAG
ATGGTGGAGG ACTTCCCTTT CCTTCCTGTT AAATGGCCGG ACGGAACTTA TGCCAACAAC
CGTGATTATC CGGGTGCAGA AGGTTCTTTC AGCTCGGTAC ACCGTTTGAT GGGACGTAAA
TTCAACCTCA ATACCCAAAC TACCCTCGGT AGCCTTTACG GAAACGTAAC ATTGGCCAAA
GGACTCGAAT TCCGTTCGGT ATTGGGTGTG AACGTGATCA ACCAGGAAGT AAACCAGTCG
CAAACGCGTA CATTGACGCC TAATGAACTG GGTACAGCGA GAAAAGAAAA CAGAAAAGAG
ACTTTCTGGT CATGGGAAAA CTTGCTGACC TACAACAAAA CATTCGGTAT CCACTCGATC
AATGCCCTTG CCGGTATTTC ATGGCAGGAA ACCAATGTGG CTACAACCAA CGTAGGTTCT
CAGAACTTCT CTACCGACTA CTACGGCTTT GATAACCTCG CGGCGGGATC GGTTGCACCT
TCATCCAACC CATACGTATC GGGCGCGTCG CGTTTCGCGT TTAACTCGTA CTTCGGTCGT
TTGAACTACA CCTTGCTGGA TAAATACCTG TTCACTGTGA CAGGACGTGC GGATGGTTCG
TCGAAATTCG GTGATAACCA CAAATTTGCA TTCTTCCCGT CGGCGGCCGT TGCATGGAAA
GTGTCTGATG AAGAGTTCCT GAAAGGCAAC ACGGTTATTT CCAGCCTGAA AGTTCGTACC
AGCTACGGTT TGACGGGTAA CTCGGAAATC CCTGCATATT CTTCACTCGG CTTGCTGCGC
TCGAACTATG CAACTGTGTA CGGCGACACC CGCTTCGGTG GTACCGGTAT CAACAGGCTT
GCCAACAACG ACTTGCGCTG GGAAAAAACA GCCCAAACCG ACGGTGGTCT GGAAATCAGC
TTCTTCAAGG GAAGAATCTC GTTCGAAGCG GATTACTACT ACCGCAAAAC AACCGACATG
CTCCTCGATG CGCCGGTGCC ACGCACCAGC GGTTACGCGA CCATCCGTCG TAACATCGGT
TCGATGGAGA ACAAAGGTTT CGAATTCGGC TTGAACACGG TGAACATCGA AAACCAAAAC
TTCTCATGGA ATACCAGCTT CAATATCTCT TTGAACAGAA ACAAAGTGTT GACGCTGGCA
ACTCCTGCGG ATATCTTCGG CGTGGGCGGT CCTTCGATCA CCAACCAAAC AAGCGTAATC
CGTATCGGCG AGCCGGTGGG TGCATTCTGG GGATTGACCC GTTTGGGCAC CTGGAGCGAG
GCTGAGGCAG CACAAGCTGC TGAATTCCGC AGCTACCGTG GTAACCTGAC CATGCTGCCA
GGTGATGTGA AGTACAAAGA CGTGAACGGC GACAAGGCGA TCACCGATGC CGACCGTGGC
ATTATCGGTA ATGGTTCTCC AAAAGGATGG GGATCACTTT CGAACAGCCT GCGTTACGGC
AACTTCGACC TGACCCTCGA CCTGCAATTC TCGTACGGCA ACGACCTGAT GGACATGAAC
CTGCACGCCA GCGAAGACCG CCAGGCATTG GCGAACAGCT ACACCACCGT ATTGGATGCA
TGGACGCCTG AAAACCAGAA CACGCCGATC GCTCAAATCC GCGATACCAA GGCTGGTTAT
GTAACCAACG TGGATACCCG CTGGATCTTC GACGGCTCAT TCATCCGTGG CCGTAACCTG
TTGCTGGGCT ACAACTTCCC GTCGGAAATT GCCAGCAAGC TGAAAATGAG CAAGCTGAGA
CTGTATCTTT CTGCTCAGAA CTTCTTCATC ATCAGCAAAT ATCCGTTCGG CGATCCCGAG
CAGACTCCTA TCCGCGGTGG CGATGGCGAC AACGTATTCT CGCAAGGTAT GATCTGGCAC
AGCTATCCTA AACCAACCAC TTTCATGGGA GGTATTCAGG TTGCATTCTA A
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| Protein sequence | MKNTDTNQWL LQMRSIRNSL LLLPALASPV IVNAALANSG TATTIRIDKT LKGKVTDKET
GDGLPGVNVV VKGTSTGTTT DGEGNYTLSV PDNATLVFSF VGYLSQELPV GNRTTLDISL
ASDSKALSEV VVIGYGTAKK SDLTGSVGSV KEEQLRERPA PSLNQALQGR VSGVQVNVNS
GRPGGRANVR IRGFSSINSS NNPLYVVDGV MLPQGNQNQQ SQAIDFINPN DIVSVEVLKD
ASSTAIYGAR GANGVIMITT KKGKSGESTI TYGLDLSVPT AGPKRAKVLN AQQYMDVEDL
AFRNMEKFDK AGWDAGKYKT HDPLVRRAQL AAAHPDVFTK RADGTFAPNY DTDWFKESTQ
NRVSQNHQLG FSGGNERTTY SLSLNYRDDQ GLIKTSYLKR YSTRFSIDDQ VKKWLRLGGT
LSYNNQAENL VDINDAVPRQ MVEDFPFLPV KWPDGTYANN RDYPGAEGSF SSVHRLMGRK
FNLNTQTTLG SLYGNVTLAK GLEFRSVLGV NVINQEVNQS QTRTLTPNEL GTARKENRKE
TFWSWENLLT YNKTFGIHSI NALAGISWQE TNVATTNVGS QNFSTDYYGF DNLAAGSVAP
SSNPYVSGAS RFAFNSYFGR LNYTLLDKYL FTVTGRADGS SKFGDNHKFA FFPSAAVAWK
VSDEEFLKGN TVISSLKVRT SYGLTGNSEI PAYSSLGLLR SNYATVYGDT RFGGTGINRL
ANNDLRWEKT AQTDGGLEIS FFKGRISFEA DYYYRKTTDM LLDAPVPRTS GYATIRRNIG
SMENKGFEFG LNTVNIENQN FSWNTSFNIS LNRNKVLTLA TPADIFGVGG PSITNQTSVI
RIGEPVGAFW GLTRLGTWSE AEAAQAAEFR SYRGNLTMLP GDVKYKDVNG DKAITDADRG
IIGNGSPKGW GSLSNSLRYG NFDLTLDLQF SYGNDLMDMN LHASEDRQAL ANSYTTVLDA
WTPENQNTPI AQIRDTKAGY VTNVDTRWIF DGSFIRGRNL LLGYNFPSEI ASKLKMSKLR
LYLSAQNFFI ISKYPFGDPE QTPIRGGDGD NVFSQGMIWH SYPKPTTFMG GIQVAF
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