| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_4254 |
|---|
| Symbol | |
|---|
| ID | 8227857 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 5148499 |
|---|
| End bp | 5151237 |
|---|
| Gene Length | 2739 bp |
|---|
| Protein Length | 912 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 644932101 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003088621 |
|---|
| Protein GI | 255038000 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.260366 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGTTT ACGGCGCATG CCATGCCCAA GCGCACTACG GCAACGAATG GATCGATTAC
AACCTGACCT ACCTGCGGAT TCCGGTGGTA ACGACGGGCC TTCACAAGAT CACCGCGGCC
GAACTTTCGC GAGCGGGCAT TTCACCAGAT TCGATCGTAG CAGCGGGCAT TCAGCTATTC
GCGCATGGAA ACGAATTGCC TGTTGAAGTC CGCGGAGAAC CATCGGGCAG GCTGGGCCGC
GACGGCTGCA TTGTATTTGC AGGCCAAAGA AATGACGGCC ACGCTGACAC CGCCCTCTAC
GCGACGCCCG ACGCAATGCC GCACCCTTAC TACAACCTCT ACTCCGACAC CACCGCCTAC
TTCCTGACGT GGCAAACCGG CAAATCCGGC CTGCGGACCC GCTTCCCCAG CCCCAGCACC
ATTACCGACA GCGCAGCATT TCATTGGGAA GAAGCAATGC AGCTATACAC TTCCCATTAC
CTGCCCGGCC GGTTTTTCCC TCCCGAAAGC AGCTACGAAA ACGGCTCATT GCTCACCGAC
TACGATGAAG GCGAAGGCTG GACAGGCCCG GAAATAGCAG CGGGAAAGCC TGTTGAAATT
ACATTCAAAA CCAGCGGACT TTTTAAAGGC AAAACGTCCG GTATAGATTG CGAAATACTC
CTCGCAGGCT GGTCGCCGGG AGCGCATGCA TTTGCATTAT GGCTGGGTGA TGCTAAAAAC
CTGCGAAGAA GAATCGTCGA TTTACACCTG ACCGGCCGCG AAACTAAGGC TACCCGGTTT
CAAATATCCA TTGACGATTT TGATGAAACG GGACAACTGA CTTTCACGCT CCTGCGCATG
AGCGTCGGCG GGCACGCCTC GGTTTCGTAC GTGCGCATAC GCTACCCGCA GGCAGGCCCG
CGAGTCGCGC CCGAACCTGT TAACACACTG CCGCCGCGCA TTGTAAAGTT CCAGCGCATT
GATCCGCAAA CGGAATACCT CATCATCACG CATCCGCTCA TGCGCACACC TGTGAATGGG
CTCGATGTGG TTGCTGAATA TGCGCAGTAC CGGGCTTCGG AGGCTGGTGG CGGGTACCAC
ACTTCGGCTG CTTACAGTTA TGAACTTTTT GACCAGTTCA ATGCCGGCCA GCCAGGCCCG
CAGGGTATTC GGAATGCAAT CCGCTGGTTG TGTGATCACG GCAACCTGCA ATTTGTGCTG
CTCGCCGGAA GGTCGATAGA CCCGCAAAAG GCACGAAAAA TGAAAGACTC CTGGCAAACG
GACATGGTAC CCAATGCTGG CTGGCCGGGT TCCGATATTG CATTGGCCAC CACCAAAGGC
TCCCGGATGC CACTCGTGCC GATTGGCCGC ATTAATGCAT TGAATGCGCA GCAACTGCTG
CATTACTTGC TGAAAGTGAA GGCCATGGAA GCCGAATCAG CCACAGCAGC CTGGCGCAAA
CGCATTTTGC ATTTAAGCGG CGGGAGGTCC AGGGATGAGT TGAATGTGTT TAAAAATTAT
GTGCAGTCTT TTGAAAAGAA ACTTGAAAAC ACACCGCTGG CGGGCAAAGT GACTACGATT
TCAAAACTGA CAGACGGTCC GGTTGAACCG GTGCGCATTG ATGGGCATTT GAACGAGGGC
GTCGGGCTCG TTACGCTGTT CGGGCATTCT TCCATTGATG TGACGGACAT CGACATCGGC
CGGGCCAGCG ATCCGGCTCG GAATTACCGG AACCACCCGC ATTATCCGGC GGTGATCGTG
AATGGCTGTG CGGCGGGAAG TATTTTTTAT TCGACGCAGA CATTGAGCAG CGACTGGATT
TTTGCTCCCG AAAGCGGCGC CGTACTTTTT TTGGCACACA CATTCAACGG CCCGTCGACC
GCACTCAAAC GCTACACCGA AATCCTATAC GAAGTCCTGG CCGACCCTGC ATTCACCAAC
GCGCCCTTCG GCATCATCCA GCAGGAAGCC ATCCGCCGGA ACTTAGCGCG CAGTCCCGGC
ATGCCCGACT GCATTACCAT ACAACAAATG ACCCTGCACG GCGATCCGGC CATCCGCATT
TTCCCGTCAA TGCGCACGGA TACCACCGCA GATAATCCAT CCGACGACCT GCCGCCGGTC
ATGCAGGTTT CGGTGGACGG CAGGCAGTTG ATCAACGGGG ATATTGTTTC ATCAAAACCG
ACGATCCGAA TCCGCATTTT CGACGAAAGC ATTCCTGAGG CCGAAAACGA CACGACGATG
ATCGCCATTT GGCTGAAAAG ACAATGCGCA GGCTGCACCG ATGTGAGAAT GCCGCTCGGC
GCCGCCGTTG GAAAAAACAT TCCGGGGCAG CATTATGAGA TCGTGCTTCA CCCTGTATTC
ATGCCCGGCA AATACCTGCT CACCATCCAG TGCCGCGACA AAGCCGCGCA TTCCGCAGCA
CCCTACCGGA TTCGTTTTGA AGTACCTGAA CACGAAGGAC CGATTACGGC AATGGTTTCG
CCAAATCCGT CACGAAGGGG GTTTAAGTTC ACGATCCAAA ACCCCGGACC GGCCGCTACC
GAGCTGGAAC TGACCATCGG GAACACGCTG GGAACGACCA TCTTCCGGAA AACGTTATCT
GTTTTTGCCG GGCGGAATGA GTGTTTCTGG ACGCCTCCCG TTCATTCTCC CGGGATTCCG
GCCGGTCTTT ATAACTACAC CATCCATAGC ACGGTTGCCG GCAGCTACAC GGCTCCGCCT
GCTGAAAGTA TGCGGGGACA TTTGCTTTAC ACGCCCTGA
|
|---|
| Protein sequence | MAVYGACHAQ AHYGNEWIDY NLTYLRIPVV TTGLHKITAA ELSRAGISPD SIVAAGIQLF
AHGNELPVEV RGEPSGRLGR DGCIVFAGQR NDGHADTALY ATPDAMPHPY YNLYSDTTAY
FLTWQTGKSG LRTRFPSPST ITDSAAFHWE EAMQLYTSHY LPGRFFPPES SYENGSLLTD
YDEGEGWTGP EIAAGKPVEI TFKTSGLFKG KTSGIDCEIL LAGWSPGAHA FALWLGDAKN
LRRRIVDLHL TGRETKATRF QISIDDFDET GQLTFTLLRM SVGGHASVSY VRIRYPQAGP
RVAPEPVNTL PPRIVKFQRI DPQTEYLIIT HPLMRTPVNG LDVVAEYAQY RASEAGGGYH
TSAAYSYELF DQFNAGQPGP QGIRNAIRWL CDHGNLQFVL LAGRSIDPQK ARKMKDSWQT
DMVPNAGWPG SDIALATTKG SRMPLVPIGR INALNAQQLL HYLLKVKAME AESATAAWRK
RILHLSGGRS RDELNVFKNY VQSFEKKLEN TPLAGKVTTI SKLTDGPVEP VRIDGHLNEG
VGLVTLFGHS SIDVTDIDIG RASDPARNYR NHPHYPAVIV NGCAAGSIFY STQTLSSDWI
FAPESGAVLF LAHTFNGPST ALKRYTEILY EVLADPAFTN APFGIIQQEA IRRNLARSPG
MPDCITIQQM TLHGDPAIRI FPSMRTDTTA DNPSDDLPPV MQVSVDGRQL INGDIVSSKP
TIRIRIFDES IPEAENDTTM IAIWLKRQCA GCTDVRMPLG AAVGKNIPGQ HYEIVLHPVF
MPGKYLLTIQ CRDKAAHSAA PYRIRFEVPE HEGPITAMVS PNPSRRGFKF TIQNPGPAAT
ELELTIGNTL GTTIFRKTLS VFAGRNECFW TPPVHSPGIP AGLYNYTIHS TVAGSYTAPP
AESMRGHLLY TP
|
|---|
| |