| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_4228 |
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| Symbol | |
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| ID | 8227831 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | + |
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| Start bp | 5118306 |
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| End bp | 5121101 |
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| Gene Length | 2796 bp |
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| Protein Length | 931 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 644932076 |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_003088596 |
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| Protein GI | 255037975 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGACATT TGGTTACAGC GATTTCCCTC CTTATTTTAA CAACCAGCGC CTGTTTGGCG
CAATTCGGCT CTATTAAGGG TACAATCAAA GACGGCAAGA ATAACGAAGC GATCATCGGA
GCGACTGTTC AGGTGGTAGG TACAACTGCA CCGCTAGGCT CGGTAACCGA CGTAGAAGGC
AACTTCGAAA TCCAGAAAGT ACCTGCGGGC TCTTATAAAG TACAGATCAG CTACGTTTCT
TACCAGACAA AAGATATCGA GAACGTTCGT GTTGAAGCAG ATAAATCCAC GCTGATCACC
ACAGCGCTGG TGGAAGACAA CAAAACCTTA CAGGAAGTGG TGGTGAAAGG CCAGCGCCAG
ACCAACACCG AGGTTTCGGT AATCACTGAA ATCAAGCAGG TGCAGCAGAT AGCGGTGGGT
ATTTCGGCCC AGCAAATCCA GCGCACACAG GACCGTGACG CGTCCGCGGT GATCCGCCGT
GTGCCCGGGA TCTCCATTTT CGACGACCGT TTCATTGTCG TACGCGGATT GAACGAGCGT
TACAACACGG TACTTCTCAA CGACATTATC ACTCCTTCTA CTGAGGTAGA CACTAAATCC
TTTTCCTTTG ACCTGATCCC ATCTTCGGCG ATAGACCGGA TGCTCGTTTT CAAATCGGCT
TCGGCTGACC TGCCCGGCGA CGTGAGCGGT GGTGCGATCA AGATTTATAC CAAAACGATC
CCCGACGGCA ACAGCTTTTC TGTGAACTTC TCAGCTGGCT ATCGTGCAGG AACGACATTC
AACTCGGCTA CCAGCCACCA GGGCGGCGCA TTGGAATTCC TTGGAATTGA GAACGGTACA
CGCACATTGC CTAATAATTT CCCGAACAGG AGAGGGGTGA TCCTGAACGC CAAGTCGCCA
TCCATTATCC AGAAATTCCA GAACCTGCCT GATTATTACG CGCCGAAGCA GATCAACGTT
TCGCCGGATT GGAGGGCGGG TATCAATTTC AGCCGCCGTT TCTATGTAAG GGACATGGAG
GTTACGAATA CTTCTTACAT CAACTATTCC TTCTCACGTA TAAACAACAG CGTCAGCCAG
AACCGCTACA ACTTCGCAGG AGAGAAAACG GAGCTGATGA ACGACCAGTT GTTGCAGGAA
AACGCCCGTT TGGGAATTAT GTCGAACTGG GCATTCATTC TGAACCCGAA GAATAAAATC
GAATTCAGAA ACCTCTTCAA CCAGATGGGT AACCGGGAAA CGGTTCTTCG CGGTGGTGGA
AACATTGAAA ACAACCTCGA TTACAACAAC GGCGCGTTCC GTTACGAAGC AAGAAGCATT
TACTCGGGCC AGCTGAGCGG TACGCACGAA TTGACCGAAA AATCAAAACT CCGCTGGATC
GGCGGTGCAG GTTACACCTA CCGCAACGAG CCTGATTTCA GAAGATATAC TTCCACACGC
CAGACGGGCA CCAACGATCC GTTCCAGATC AACCTGCAAC AATTCGAATC ACCTACGTTG
CAACAGGCCG CACGTTTCTA CTCCCGCCTG GGCGAGATCG TCGGAACGGG AACTGTGTCT
TTCGAGCAGA TGATCGGTAC GAAAAAGGAG GATGCCGAGC AGCAGGCGAA ACTGAATGTG
GGTACTTATG TGGAATACAA AGACCGTAAA TACTCTGCCC GCTGGTTTGG TATCGTTAAC
CCGAACCGCG TAGGCGACGA GATCCTGACG CAGACGCCCG AGCAGTTTTT CCAGAACTCT
AACCTGGCTT CTGACAAAGT GTATTATACC GAAGGAACGA ACTTCGACGA CAAATATGCC
GCACAAAACC TTCTGGCAGC CGGTTACGCA TCACTCTACT GGCCTATCAC GGAGCGTTTG
AATGCAACCG TAGGTTTCCG GGGCGAATAC AACCGCCAGC AGTTGCAGGG TTTCGAACGC
GGAGGTGGTA TTGAGGTGAA TGTGGACCGC CCGGTTTTCA CACCGCTGCC TTCTGTCAAC
CTTACTTACA AATTCAACGA GCAGCACGCC CTGAGAGCGG CTTACAGCAC AACGGTGAAC
AGACCGGAGT TCCGCGAGCT TTCGCCAAGC ACATATTACG ACTTCAACTT CGACGTGTCA
CGGAAAGGAA ATCCTAACCT CGTGAATGCA ACGATCCAGA ACTACGATTT CAGATACGAG
TTTTATCCTA GCAAAAGCGA GCTGATCACC CTCTCGTTGT TCAACAAGAC ATTCAAAAAC
CCGATCGAAG CGGCGATCTT CTATAACGGC AGCACGGTAG CATTTACCGT TGCCAATGCG
AAAAAGGCTT ACGCAAGAGG TGTGGAACTG GAAGTACGTA AAGCACTTTC CAACCCCGAA
AACGCCACTT TCCTGAGCAA AATGCTCGTA ACGCTGAATG CATCGGTGAT TACCAGCGAC
GTGAAAACGA ACGTTACTTC CGGCAGCAGC GACCGTTACC TGCAAGGGCA GTCGCCTTAC
CTCGTCAATG CAGGCTTGTT CTACAACGAC GACGAGCGCG GGTTCCAGGT GAATGCATTG
TACAACGTGA TCGGCAAGCG GATTTTCATC ATCGGCGACA ACGTGATCAG CGCCAACATT
TTCGAAATGC CGCGTAACGT GATCGACCTC AACATTATCA AAACCATCGG AAAACGCCTC
GAACTCCGCG CAAGCATTCA GGACCTGCTC AACCAGCCAT TCCGCTTGTA CCAGGATACC
AACCGTGACA ACAAGATCGA TACCAAAACG GATGGCTTGT ACCAGAAATA CCGCAGAGGT
ACTTACTCGA TGATTGGACT GCGTTACACA CTTTGA
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| Protein sequence | MRHLVTAISL LILTTSACLA QFGSIKGTIK DGKNNEAIIG ATVQVVGTTA PLGSVTDVEG
NFEIQKVPAG SYKVQISYVS YQTKDIENVR VEADKSTLIT TALVEDNKTL QEVVVKGQRQ
TNTEVSVITE IKQVQQIAVG ISAQQIQRTQ DRDASAVIRR VPGISIFDDR FIVVRGLNER
YNTVLLNDII TPSTEVDTKS FSFDLIPSSA IDRMLVFKSA SADLPGDVSG GAIKIYTKTI
PDGNSFSVNF SAGYRAGTTF NSATSHQGGA LEFLGIENGT RTLPNNFPNR RGVILNAKSP
SIIQKFQNLP DYYAPKQINV SPDWRAGINF SRRFYVRDME VTNTSYINYS FSRINNSVSQ
NRYNFAGEKT ELMNDQLLQE NARLGIMSNW AFILNPKNKI EFRNLFNQMG NRETVLRGGG
NIENNLDYNN GAFRYEARSI YSGQLSGTHE LTEKSKLRWI GGAGYTYRNE PDFRRYTSTR
QTGTNDPFQI NLQQFESPTL QQAARFYSRL GEIVGTGTVS FEQMIGTKKE DAEQQAKLNV
GTYVEYKDRK YSARWFGIVN PNRVGDEILT QTPEQFFQNS NLASDKVYYT EGTNFDDKYA
AQNLLAAGYA SLYWPITERL NATVGFRGEY NRQQLQGFER GGGIEVNVDR PVFTPLPSVN
LTYKFNEQHA LRAAYSTTVN RPEFRELSPS TYYDFNFDVS RKGNPNLVNA TIQNYDFRYE
FYPSKSELIT LSLFNKTFKN PIEAAIFYNG STVAFTVANA KKAYARGVEL EVRKALSNPE
NATFLSKMLV TLNASVITSD VKTNVTSGSS DRYLQGQSPY LVNAGLFYND DERGFQVNAL
YNVIGKRIFI IGDNVISANI FEMPRNVIDL NIIKTIGKRL ELRASIQDLL NQPFRLYQDT
NRDNKIDTKT DGLYQKYRRG TYSMIGLRYT L
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