| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_4162 |
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| Symbol | |
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| ID | 8227760 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | + |
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| Start bp | 5021807 |
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| End bp | 5023138 |
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| Gene Length | 1332 bp |
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| Protein Length | 443 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 644932005 |
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| Product | outer membrane efflux protein |
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| Protein accession | YP_003088530 |
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| Protein GI | 255037909 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00000533026 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.288124 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAGTA AATGGATCGC AGCAATCATG GTCGCAGCCG CCTCGGTGGC GCCGGGCTGG
GCTCAAACGA GCCTGACTTT GAAGGATTGC ATTGCATACG GGATCAAGAA CAACGGGAAT
GTCAAAATAG CCCAGTATAA GGAAAGTACG GCCGTTCAGC AAGGACGAGA GGCGCTTGCG
GGTTATCTGC CGCAAGTGGC GGGTAATGCC TCGCTCGACG ATAACCTGAA ACTGCAATCG
ACCGTGCTGC CGGGCGCATT GTTTGGCGGG GAAGACCGTC GCGTGGCGCT GGGTACCAAA
TACCAGAGCA ATGCATCGGC CCAGGTAGAC CAGGTGGTGT TCGACCAGGC GATGCTGATC
GGCATTAAGG CCAACAAGCC TAACCAGCAA AATGCAGTGC TGAACTCGCA GCGGACGAAG
GAAACGATCA TATATAATGT CGCCAATGCT TATTACCAGG TGTTTGTAAC CCAGCAGCAG
ATCGCGCTTT TGAAGGATAA TCTGGATAAA ACGAGTCAGA TCCTGGGTAC ATTGAAGCTG
CAACTCGACA ATGGCGTGAT CAAGAAAGTG GATTACGACC GCACGCAGGT GAATTTGAAT
AACATCAAAT CACAACTCAC ACTCGCCGAA AGTAATCTCA CGCTTTCCGA AAACCAGCTT
AAATTCCAGA TGGGCATGCC GCTGACCGAA CCGTTGGTTT TGGCAGACAA TCCGCTGGAA
CAGCCATTCA AGCTCGTGGA ACCGGGCGCG TTCGAGGCTT CCAACCTGAC GGATTTTAAA
ATACAAAACC TGAACATGGA GTTGCAGGAG CTGGAAAAAG CGCGCATCAA GGCCGGTTAC
CTCCCCAAAG TGTCGGTTTA CGGCCGTTAT GGCGTGCAGG CGTTGGGCAA CGACCTGGGT
ACTTCCTGGG GCAACTGGTT CAGCTACGGC GCCATCGGTT TGAAACTGAG CATTCCGATT
TTCGACAGCT TCCGCCGCGA TGCCCAATTC AAGCAGGCCG ATTTGAACCT GATGACGCAG
AAAGAGCAGC TGAAACTGAA TGTGCAGAAC TACGAATTGC AGAACAGCAA CGCATTGACC
CAGCTTCAAA AAGCGAAATC CAACCTGGCC AGCGACGAAA ATAACGTGAA CCTCGCGAAA
GAAGTCTACG ACGTAACGAC CCTTCAATAT AAAGAAGGCA CCGTTCCGCT CACCGACCTC
CTCAACGCCG AAACGTCCTA CAAAGAGTCG CAAAGCAACT ACATCAACTC GATGCTGAGC
TACTACCAGG CCAAACTCGG CTTGGAGCAG TCACAAGGCA GTCTTAATAC TTTTTACACA
GCATTGCCAT AA
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| Protein sequence | MKSKWIAAIM VAAASVAPGW AQTSLTLKDC IAYGIKNNGN VKIAQYKEST AVQQGREALA
GYLPQVAGNA SLDDNLKLQS TVLPGALFGG EDRRVALGTK YQSNASAQVD QVVFDQAMLI
GIKANKPNQQ NAVLNSQRTK ETIIYNVANA YYQVFVTQQQ IALLKDNLDK TSQILGTLKL
QLDNGVIKKV DYDRTQVNLN NIKSQLTLAE SNLTLSENQL KFQMGMPLTE PLVLADNPLE
QPFKLVEPGA FEASNLTDFK IQNLNMELQE LEKARIKAGY LPKVSVYGRY GVQALGNDLG
TSWGNWFSYG AIGLKLSIPI FDSFRRDAQF KQADLNLMTQ KEQLKLNVQN YELQNSNALT
QLQKAKSNLA SDENNVNLAK EVYDVTTLQY KEGTVPLTDL LNAETSYKES QSNYINSMLS
YYQAKLGLEQ SQGSLNTFYT ALP
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