| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_4157 |
|---|
| Symbol | |
|---|
| ID | 8227755 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 5015945 |
|---|
| End bp | 5017438 |
|---|
| Gene Length | 1494 bp |
|---|
| Protein Length | 497 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 644932000 |
|---|
| Product | peptidase M61 domain protein |
|---|
| Protein accession | YP_003088525 |
|---|
| Protein GI | 255037904 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3975] Predicted protease with the C-terminal PDZ domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 40 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATTATT ACGTTTCCGT ACCTGACCCG CAATCCCGTT TTCTCGACAT TACCTACACC
ATCCCCGAAA TCACCAGCGA TCACATCGAG ATCCAGCTGC CTGCGTGGCG GCCCGGGCGG
TATGAGCTTC AAAATTTTGC CAAAAATATT CAATTTATCG AAGCGACCTC ACCCGCTGGT
CACAAACTGC CTTTGCATAA AGTAACCAAA GACCGCTGGC GCGTTGGAAC GGCGGGCGAA
AACGAGGTCC GGATACATTA TACTTACTAC GCAGCCATTC AAAATGCGGG CAGCAGCTAT
GTGGACGAGG GATTGTGGTA TCTCAATTTC GTCAACTTCT GCATGTACAC CGAAGGCCGC
ATGACGGAGC CTTACCACGT GGAGCTGGAT TTGCCCGAAG GATACCAAAT CGCGTGCGGT
TTGCCATCGG CTGGTAAGAA TGCATTATCG GCCAGGGATT TTTATCAGCT GGTCGACAGC
CCGATGCTCG CCTCGGCAAC CTTACAGCAG TGCGACTACG AAGTCCGCGG CGTGCAGTTT
AAAATATGGA TGCACGGCAA CCTGAAACCT AACTGGCGCC GCATCGAGCG CGATTTCCGC
CGCTTTTCCC GCGAGCAGAT CGCGATGATG CAGGAATTCC CGGAAAAAGA CTACCATTTC
CTGAACCTCA TTTTACCCAC CGCATTCTAC CACGGCGTGG AGCACCAGAA CTCGACGATG
GTGGTGCTCG GCCCAGACGA TGAGGGCGAA GGCCTGTATG CCGACCTCCT CGGCGTGAGC
TCGCACGAGC TTTTCCATGC CTGGAATATC ATCCGCATTC GTCCTGCGGA GCTGTTACCC
TATGATTTTA CCAAAGAAAA CTATTTCCAA ACCTGCTTTG TGGCCGAAGG CTGCACGACT
TACTATGGCG ACTTGTTCCT GAAACGGGCC GGCGTGTTCA ACGACGAAAC CTACATCAAG
GAATTGCAGG TGTATATGAA GCGCCATTTC GAAAGCAGCG CCCACGCCGC GCAATCGCTG
GCCGAATCGT CGTTCGACCT TTGGTTGGAT GGCTACGAAA AGGGCATCCC GAACCGTAAA
GTGTCGGTGT ACCACAAGGG TGCATTGGTA GCGCTCATTC TGGATTTGTA TTTGAGGAAA
AAAACCAACC ACACCCAGTC GCTGGACGAT GTGATGCGCC TGCTATGGGT GCGTTTCGGC
AAGCCATTTA TCGGTTACAC GGTTCAGGAT TATATCAATA TTGTAGAGGA AGTAGCCGGC
GAATCGCTGG AATGGTACTG GCATGACTGC ATTTTTACTG CCACGCCGCT CGAAGACCGC
CTGAACGAGG CGCTTGCATT CGTAGGCTTG CAAATGTCGG TTTTCAGCAA TGGCAATGTG
CAACTGAACG TGCTGGATGA TTTTAAGGCA CAACTCCAAC GGGAAAAATG GCTCGAAACC
GCACAGGTGC TGACGATTGA CGAAGAGGAG TTGGAGAGTG ACGAGGAGGA GTGA
|
|---|
| Protein sequence | MHYYVSVPDP QSRFLDITYT IPEITSDHIE IQLPAWRPGR YELQNFAKNI QFIEATSPAG
HKLPLHKVTK DRWRVGTAGE NEVRIHYTYY AAIQNAGSSY VDEGLWYLNF VNFCMYTEGR
MTEPYHVELD LPEGYQIACG LPSAGKNALS ARDFYQLVDS PMLASATLQQ CDYEVRGVQF
KIWMHGNLKP NWRRIERDFR RFSREQIAMM QEFPEKDYHF LNLILPTAFY HGVEHQNSTM
VVLGPDDEGE GLYADLLGVS SHELFHAWNI IRIRPAELLP YDFTKENYFQ TCFVAEGCTT
YYGDLFLKRA GVFNDETYIK ELQVYMKRHF ESSAHAAQSL AESSFDLWLD GYEKGIPNRK
VSVYHKGALV ALILDLYLRK KTNHTQSLDD VMRLLWVRFG KPFIGYTVQD YINIVEEVAG
ESLEWYWHDC IFTATPLEDR LNEALAFVGL QMSVFSNGNV QLNVLDDFKA QLQREKWLET
AQVLTIDEEE LESDEEE
|
|---|
| |