| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_4146 |
|---|
| Symbol | |
|---|
| ID | 8227744 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 5008010 |
|---|
| End bp | 5008447 |
|---|
| Gene Length | 438 bp |
|---|
| Protein Length | 145 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644931989 |
|---|
| Product | transcriptional regulator, XRE family |
|---|
| Protein accession | YP_003088514 |
|---|
| Protein GI | 255037893 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG5499] Predicted transcription regulator containing HTH domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.416427 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACACAT TGAGATACAA GGTCATCAGG AATTTCGAGC AGTATAACAA TTACTGTAAT
GAGCTCATAC AAATGTTGGA GTCCGAAAAT CCGGATCAAT ATGAGGAAGA AATTGATCTG
CTTACAGTCC TGATCGAGCA CTACGACGCG GAGAACACCA TTTTTAAAGG CGAGTTCGAT
CCTGTGGAAC TGCTCAAATC ACTTATGAAG GATCATCAAA TGAAGGCTAA GGACATTGCC
GAGTTGCTAA ATGTAAGCAA AGGATATGTA TCCGAAATTT TGAATTACAA AAAGGGGATG
TCCAAAGATG TGATCCGCAA GCTGGCCACG CGTTTTGCGA TGCGGCAGGA GGCATTCAAC
AAGCCGTACC GTTTGGAAGG GGAGAGAATG ATGGTGGAAG AGGAGAATGC GGTGGCGCAG
CAGACTGTGC TTTCATAA
|
|---|
| Protein sequence | MDTLRYKVIR NFEQYNNYCN ELIQMLESEN PDQYEEEIDL LTVLIEHYDA ENTIFKGEFD
PVELLKSLMK DHQMKAKDIA ELLNVSKGYV SEILNYKKGM SKDVIRKLAT RFAMRQEAFN
KPYRLEGERM MVEEENAVAQ QTVLS
|
|---|
| |