| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_4131 |
|---|
| Symbol | |
|---|
| ID | 8227729 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 4988906 |
|---|
| End bp | 4990222 |
|---|
| Gene Length | 1317 bp |
|---|
| Protein Length | 438 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 644931974 |
|---|
| Product | membrane-associated zinc metalloprotease |
|---|
| Protein accession | YP_003088499 |
|---|
| Protein GI | 255037878 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0750] Predicted membrane-associated Zn-dependent proteases 1 |
|---|
| TIGRFAM ID | [TIGR00054] RIP metalloprotease RseP |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.158582 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGAAATAT TGATCATGGC AGGGCAGCTT ATCCTGGGCC TGTCGATCCT GGTGGGGTTG
CATGAGTGGG GGCACATGGC CGCCGCAAAA ATGTTCGGAA TGAGGGTTGA AAAATACTTT
ATAGGCTTTC CTCCTAAAAT TTTCAGTTTC CAGAAAGGCG AAACAGAGTA CGGCATAGGC
GCGATACCGC TGGGCGGGTT TGTAAAAATT TCCGGGATGA TCGACGAGTC GATGGACACC
GAAAGCATGA GCCAGGAACC GCAGCCGTGG GAATTCCGCT CGAAACCAGC CTGGCAAAGG
CTGATTGTCA TGCTCGGCGG GATCATCGTA AACGTAATCG TGGGGATTAT CATATTCATT
GCCATTGCTT ACCACGACGG CAGGAAGTTC CTTTCGATCA ATGAAGTGAA TAAGTACGGC
ATCGTGGCGG GCGAACTCGC TCAGGAAATT GGGCTTAAAA CCGGCGATAA AGTGATCCGC
GTGAACGGCA AGCCCTTCTC CGATTACAGC GACCTGGTGA GCTCGGAGGT GTTCCTGGGC
AGCAACAGCT CCTACACCGT GCTTCGCAAC GGCCAGGAGA TCCAGATCGA CATTCCGAAT
AATTTCATCG AAAAACTTTC GGACCCCGAC GAGAAACGCA ACTTTATCCT CCCGCTCGAA
CCATTCAAGA TCGGCGAGCT GATTCCCGGA ATGCCGGCAG AAAAAGCAGG CCTGGAACCT
GGCGACAAAG TAGTGTCCAT CAACGGAGCG CCTATCCGGT TCTTCCACGA ATTGCAGGCG
CAGCTAGAAA CGCTGGCAGG CAAGGCAACC ACGCTGGTCG TACAACGCGG CGAAGGACAG
AAAACATTGA ATGCGACTGT AAGCGAAGAG GGCACGCTAG GGTTCTATCC CGAAACGCTG
CTGAACTTCA CCACCGTGAA TTATTCGTTT GGCGAGGCCG TGGCTATTGG CACGGAGAAT
GCCTTTGGCG TGGTGTATAA TAATATCAAA GGTTTCGGTA AAATTTTCCG CGGTGAAGTT
TCCGCTTCCA AAGCGCTGAG CGGGCCGATC GGCATTGCCC GGATGTTCGG CGGCGTGTGG
GATTGGGGCC GTTTCTGGTC ACTCACCGGC CTTCTCTCAA TGGTACTCGC ATTCATGAAC
GCCCTGCCGA TCCCTGCGCT GGACGGCGGC CACGCGGTAA TCCTATCCTA CGAAATCATC
TCCGGCCGCA AGCCGTCCGA CCGTTTCCTC GAAAACGCAC AAAAAGTGGG CATGGTACTC
CTGCTCGGCC TGATGGCGTT CGCGATCTTC AACGACGTAT GGAAAGCGGT ATTTTAG
|
|---|
| Protein sequence | MEILIMAGQL ILGLSILVGL HEWGHMAAAK MFGMRVEKYF IGFPPKIFSF QKGETEYGIG
AIPLGGFVKI SGMIDESMDT ESMSQEPQPW EFRSKPAWQR LIVMLGGIIV NVIVGIIIFI
AIAYHDGRKF LSINEVNKYG IVAGELAQEI GLKTGDKVIR VNGKPFSDYS DLVSSEVFLG
SNSSYTVLRN GQEIQIDIPN NFIEKLSDPD EKRNFILPLE PFKIGELIPG MPAEKAGLEP
GDKVVSINGA PIRFFHELQA QLETLAGKAT TLVVQRGEGQ KTLNATVSEE GTLGFYPETL
LNFTTVNYSF GEAVAIGTEN AFGVVYNNIK GFGKIFRGEV SASKALSGPI GIARMFGGVW
DWGRFWSLTG LLSMVLAFMN ALPIPALDGG HAVILSYEII SGRKPSDRFL ENAQKVGMVL
LLGLMAFAIF NDVWKAVF
|
|---|
| |