Gene Dfer_4115 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_4115 
Symbol 
ID8227713 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp4967258 
End bp4968835 
Gene Length1578 bp 
Protein Length525 aa 
Translation table11 
GC content53% 
IMG OID644931958 
ProductOmpA/MotB domain protein 
Protein accessionYP_003088483 
Protein GI255037862 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGTGCTT TCTGCCTTTT AGCCTTGACT GTCGTTTCCT CCTACTGTGC CCACGCACAA 
TTGGAAAACC TCGGAAAATC GATCAATACC GAATACAACG AGATCAGCCC GATCATTTCG
CCCGACGGTA AAACGATCTA CTTCTCGCGC GTAAGCCATC CGCAGAACAC GCACGGCCCG
AAAGGCAGCC AGGATATCTG GTTTTCTGAG CTGAAAAGCG ATAAATGGAC GCCCGCACGC
AGGCTGCCCG CACCACTTAA CAAGGAGGAT TACAATAGCC TTTACAGCAT CACACCCGAC
GGCAACACCT TGCTGATCAA GGGTTCCTAC AAAAACGGCA CCTACGAGAC ACGCGGCTTT
TCCACCAGTA AAAAAACGGC AAGGGGCTGG TCGGCGCCGA ATAAGCTGGA CATTCCAGGT
TATACCAAAC TCAGCAAGGG CCAGTTCGAC TGCGGCTATC TGTCGAATGA CGGAAAAGTG
CTGGTCATGT CATTCAGCGA GAAGAAAAAC AGCAAAGTGG ATGACCTCTA CGTCAGTTTC
AAGCAAAAAG ACGGTTCCTG GTCCAAACCG ATGAATCTCG GCGCGGAGAT CAATACGGAA
GATTTTACCG AAACGACCCC TTTTCTTGCC CCGGACGGCG TAACGCTGTA CTTTTCCAGC
GACCGCAAAG GCGGCCAGGG AAGCAATGAC ATTTATTACA GTAAGCGCAT TGACAAGTCA
TGGAAAAGAT GGAGCCGACC CGTAAACCTC GGCCCGGCCA TCAATACCGA TGGTTATGAC
GCCTATTACA CGATTTCTGC CCTCGGCGAC TTCGCGTACA TGGTCTCTTT TAAAGACACC
GAGGGCAAAG GCGACATTGT CCGGTACAAT CTTCAACCCA AACCTGCGCC TGCCGATTCG
GCGGTTGAAG CGCCCGTGGC CGTTGTTCCG CCATCCGACC CCGTCGTGAT GATCAGCGGC
AAGGTCATCG ATTCCAAAAC CAATAAGCCG GTAGAGGCGA CGATTATTTA CGAAGACCTG
ACAACCGGTG AAGAAGTGGG AACGGCGACC ACCAACCCAA CCACCGGAGA GTACAAACTC
GTGCTTCCTT ATGGCCAGAA GTACAGTATG CGCGCCGTAG CGCCCAATTT CATAGCCGAG
GGCGAGAACA TCGACCTTAC CGACTCGACC GGGAAAGAGA AGAGCTTCAA GGAAATAGCC
AATAAGTCGC TCAAACTGAT CCCGATCGAA GAAGGCCAGA TCGTACGGCT CAACAACATC
TTCTTTGCCA CCGGGAAGGC CACGCTTCGG GAAGAATCAT TCCCCGAACT GAACCGTATT
GCCATTTCAA TGACCGAAAA CAAGACATTG GCCATTGAGC TCGGCGGGCA CACGGATAAC
ACCGGTAGCG CGGAGTTTAA CGTCAACCTA TCGCAGGAGC GTGCAGACAC CGTTCGCGAG
TACCTCATCG GGAAAGGCAT TGAGCCGGAT CGCATCGCCA GCAAGGGTTA TGGCGAAACC
AAGCCTGTCG CCACGAACGA CACGCCCGAA GGACAGCAAC AAAACCGTCG CGTGGAATTC
AAGATATTGA AGAAATAG
 
Protein sequence
MRAFCLLALT VVSSYCAHAQ LENLGKSINT EYNEISPIIS PDGKTIYFSR VSHPQNTHGP 
KGSQDIWFSE LKSDKWTPAR RLPAPLNKED YNSLYSITPD GNTLLIKGSY KNGTYETRGF
STSKKTARGW SAPNKLDIPG YTKLSKGQFD CGYLSNDGKV LVMSFSEKKN SKVDDLYVSF
KQKDGSWSKP MNLGAEINTE DFTETTPFLA PDGVTLYFSS DRKGGQGSND IYYSKRIDKS
WKRWSRPVNL GPAINTDGYD AYYTISALGD FAYMVSFKDT EGKGDIVRYN LQPKPAPADS
AVEAPVAVVP PSDPVVMISG KVIDSKTNKP VEATIIYEDL TTGEEVGTAT TNPTTGEYKL
VLPYGQKYSM RAVAPNFIAE GENIDLTDST GKEKSFKEIA NKSLKLIPIE EGQIVRLNNI
FFATGKATLR EESFPELNRI AISMTENKTL AIELGGHTDN TGSAEFNVNL SQERADTVRE
YLIGKGIEPD RIASKGYGET KPVATNDTPE GQQQNRRVEF KILKK