| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_4061 |
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| Symbol | |
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| ID | 8227659 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | + |
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| Start bp | 4908356 |
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| End bp | 4910116 |
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| Gene Length | 1761 bp |
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| Protein Length | 586 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 644931904 |
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| Product | Tetratricopeptide TPR_2 repeat protein |
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| Protein accession | YP_003088429 |
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| Protein GI | 255037808 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000000000018866 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.000000049947 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAACAGAA ACATGAGAAT GAAATTAGTA GCATTGGTAA TTGGTTTATT AGCGTTTGTT
AACTTACACG CACAGACGGT ACAGGATGGC TTGGCTTTAA TTCGTGGCGA ACGTTACACT
GAGGCAGGAG ATTTGTTCAA GAAACTTGCC GAAGGAAGCC CTTCTGCTGA TAACCAATAT
TACCTTGGTT ATTACTATAT CAAAACCGAC CAATTGGATG AGGCGCAGAA AGCATTCGAC
AAAGGTCTGT CGCTGGACGA CAAGTCATAT CTGAACAAGG TAGGTCTTGG AACAATCGCC
CTGGCGAAAG GTGACCGTGC AAAGGCGAAA GAGCTTTTCG ATGAAGCTGA AAAGAAGAAA
AAGAAAGATG CCGAAGTTCT TTTCAGAATA GGCGAGGCTT ACACGCTGTT TGAGAAAAAC
AATGATCCTG CCGAAGCGAT CCGTTTGCTT GACCTGGCAA TTGCCCGTGA TAAAAACCTG
GCTGACGCTT ACCTTGCAAA GGGCGACGCG CTGATGCTGC GTAACGAAGG TGGTAACGCG
GTTACAGCTT ACGAATACGC TTTGACAACG AAACCAAACT ACGCAGCTGC TCACAATGCA
ATCGGTTCTA TTTACCTCCG TGGTAAAAAC TACAACCTTG CATTGGAGAA CTATAAGAAA
GCGATCGAGG CTGATGCGAA CTTCGCACCT GCTTACAAAG ACCTGGCTGA ACTTTACTTC
TGGGCTCAGA AATACAAGCA GGCTGCTGAA AACTTCGATC TTTACCTGCA AAAAAGCGGT
AGCACCGATC CTAAAATGAA GCTCCGTGGT GCACAGTTTG CATTTACTGC TGACGACTAC
GCGAAATCGC TCCAATTCCT GGAAGAAGCA AAAGGCAAAA TCAACGACCC TATCACCAAG
CGTATGTATG GTTGGGCGTA TTTCAAAACC AACAAGCCTG ACGAAGCGAT CCAGAACCTG
GAAGAATTCA TCAAAGTTGC TCCTGAGAAA GTAATCGGCG ACGACTACAA ATACCTCGGC
CGTGCCCTGA ACGCTAAGTC AACCGACGGC AAAGGCTACG ATTCGTTGGG TATGGAGTAT
ATCAAAAAAG GTGCTGAAAT GGATACCAGC AAAGCGGAAG CTGCTGCTGC TTACAAAGAA
GTTGCCGGCT TGTACTACGC TGCCAAAGAT TTCCCTAAGG CTGCTGCTGC TTACGAAAAA
GGTAACGATC TGGATACAGC AAAAGCAAGC GCTAACGATT ACTACTACGA AGGTCTTGCT
AACTTTCAGA GCGCACAAGC TATGGTCGTT CCAACGTCGG CAGATTCTAA CTTTGCTGAC
AGCTCGAAAA TTGCAATCGA CAAGCGCAAC CTGTACCTGA AGGCGGATTC AATCTTCGCT
ACCGTAACGC AGAAACTGCC TGAATGGCCT TACGGTTACT ACTGGCGTGC AAGTACGCTT
TACAATGCGT ACGACAGACA AGAGAATGTT GATAAGGGTA TTTCGCAACC ATACTACCTG
AAATTGACGG AACTTGCTGA AAAAGACCCA GATCCTAGCA AATACAAGTC GTATCTCCGA
TTGGCTTACG GTTACCTGGC ATTCCACGCA CAGTCGACGT TGAAAGACGA AGCGAAAGCG
AAGGAGTATT GGGAGAAACT ACTGAAAGTA GATCCGGACA ATGCGGCTGC AAAAGAAGCA
TTGGGACTCG CAGTTGCCCA GCCGGCAGCG CAACCAGCAG CAGCTGGTAC TGCGGCTAAG
CCTGCTCCAA AGAAGAAGTA A
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| Protein sequence | MNRNMRMKLV ALVIGLLAFV NLHAQTVQDG LALIRGERYT EAGDLFKKLA EGSPSADNQY
YLGYYYIKTD QLDEAQKAFD KGLSLDDKSY LNKVGLGTIA LAKGDRAKAK ELFDEAEKKK
KKDAEVLFRI GEAYTLFEKN NDPAEAIRLL DLAIARDKNL ADAYLAKGDA LMLRNEGGNA
VTAYEYALTT KPNYAAAHNA IGSIYLRGKN YNLALENYKK AIEADANFAP AYKDLAELYF
WAQKYKQAAE NFDLYLQKSG STDPKMKLRG AQFAFTADDY AKSLQFLEEA KGKINDPITK
RMYGWAYFKT NKPDEAIQNL EEFIKVAPEK VIGDDYKYLG RALNAKSTDG KGYDSLGMEY
IKKGAEMDTS KAEAAAAYKE VAGLYYAAKD FPKAAAAYEK GNDLDTAKAS ANDYYYEGLA
NFQSAQAMVV PTSADSNFAD SSKIAIDKRN LYLKADSIFA TVTQKLPEWP YGYYWRASTL
YNAYDRQENV DKGISQPYYL KLTELAEKDP DPSKYKSYLR LAYGYLAFHA QSTLKDEAKA
KEYWEKLLKV DPDNAAAKEA LGLAVAQPAA QPAAAGTAAK PAPKKK
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