| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_4052 |
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| Symbol | def |
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| ID | 8227650 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | + |
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| Start bp | 4901797 |
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| End bp | 4902381 |
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| Gene Length | 585 bp |
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| Protein Length | 194 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 644931895 |
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| Product | peptide deformylase |
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| Protein accession | YP_003088420 |
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| Protein GI | 255037799 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
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| TIGRFAM ID | [TIGR00079] peptide deformylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.0000087086 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGATTTATC CAATAGTTGC ATACGGTGAC CCCATCCTGA GAAAGCCGAC CCGTTTTATC
GAGAAAGATG AAGTGGATTT GAAGAAACTT TCAGAGGATA TGTTCGAAAC TATGCACGGA
GCGAACGGCG TTGGGCTTGC GGCCCCGCAG ATCGGTCTGA ATATCCGCAT TTTCGTAGTG
GACGGCACGC CGTTCGCCGA AAGAGATGAG GACGATGACG ACGAGCCGGA TCTGTCATTG
GTCGATTTCA AAAAGACATT CATTAATCCC GAGATATTGG AGGAAACCGG CGAGGAATGG
GGATTCGAAG AAGGCTGCCT GAGCATTCCC GGCATCCGCG GAGATGTGTA CCGCCCCGAA
ACGCTCCGCA TCCGCTACCG CGACCTCGAC TGGAACGAGC ATGAAGAAAC CTATTCCGGC
ATGGCGGCCC GCATTATCCA GCACGAATAC GACCATTTGC TGGGCAAACT GTTTGTAGAT
TACCTGCCGA CGCTCAAAAA GCAGTTTATC AAAAAGAAAC TGACCGATAT TTCCAAAGGA
AACGTAGATG CCGACTACCG CATGCGTTTT CCGGGCCGGA GATAA
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| Protein sequence | MIYPIVAYGD PILRKPTRFI EKDEVDLKKL SEDMFETMHG ANGVGLAAPQ IGLNIRIFVV
DGTPFAERDE DDDDEPDLSL VDFKKTFINP EILEETGEEW GFEEGCLSIP GIRGDVYRPE
TLRIRYRDLD WNEHEETYSG MAARIIQHEY DHLLGKLFVD YLPTLKKQFI KKKLTDISKG
NVDADYRMRF PGRR
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