Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_4050 |
Symbol | |
ID | 8227648 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | - |
Start bp | 4899504 |
End bp | 4901216 |
Gene Length | 1713 bp |
Protein Length | 570 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 644931893 |
Product | single-stranded-DNA-specific exonuclease RecJ |
Protein accession | YP_003088418 |
Protein GI | 255037797 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0608] Single-stranded DNA-specific exonuclease |
TIGRFAM ID | [TIGR00644] single-stranded-DNA-specific exonuclease RecJ |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.0000178442 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGATTGAAA AGCGCTGGAT ACACCACCCT CCCTTTACCT CTGAACAAGA ACAGGTTGCG CAGAGCCTTG CCGAATCTTT GAAAGTAAGT CCCTCGCTGG CAACGCTTTT GGTTCAGCGC GGCATTCTCG ATTTCGATCA ATCCCGCGAT TTTTTCCGCC CCGACATCCG GCATTTGCAC GATCCTTTCC TGATGGCCGA CATGGAGAAA GCCGTCGAGC GTTTGATCAA AGCCATTGAT TCAAATGAGA AAATACTGGT TTACGGAGAT TACGATGTGG ATGGCACCAC GTCCGTCGCA CTCTTCTATG GTTTTCTCAA AAGAATTTAT CCCAATCTCG ACTACTACAT TCCCGACCGC TACGAGGAAG GCTACGGCGT TTCGTGGCAA GGCGTGGAAT GGGCGCATGC CAATGGCTAT ACATTAATAG TAACCCTCGA CTGCGGCGTC AAATCTGTGG ACAAGGTTAC CGCCGCCCTC GAGAAAGGCA TCGACTTCAT TATATGCGAC CACCACCGCC CCGGCGATGA GCTTCCGCCT GCCGCCGCGG TGCTCGATCC GAAGCGCGAG GATTGTTTGT ATCCTTATAA AGAGCTCACC GGCTGCGGCG TCGGATTCAA ATTATTGCAG GCATTTTGTG TCAAGCAGGT CCTCGATCCC GAGACGTTGT ACGATTACCT GGACTTGCTG GTGGTCAGCA TCGCATCCGA CATTGTGCCT ATTACCGGCG AAAACCGCGT GCTGGCATTC TACGGCTTGC AAAGACTGAA TGCACAACCG CGGACGGGCA TTAAAGCATT GATCCAGATT TCCGGGATGA CTGGCGCGCT CGACATTACG AATGTCGTTT TCGGTCTCGG GCCGCGCATT AATGCCGCCG GGCGTATCAA GCACGCCAAG GAAGCTGTAA GATTGCTGCT TTCCGAAATC GAGGAAGAAG CCATTTCATT CGCCGAAGAA ATCAACAAGC ATAACAGCGA GCGCCGCAAC TTCGATTCGA GCATTACCGA GCAGGCGCTT TTTATGATCG AAAACGACGA ATGGTTTTCG AATGCAAAAA GTACCGTATT ATATAAGGAA GACTGGCACA AAGGCGTGAT CGGCATTGTG GCCAGCCGCT GCATTGAAAA ATACCACCGC CCGACTATTA TCCTCACGCA TTCGCACGGA AAAGCCGCCG GTTCTGCACG CTCGGTGCCG GGTTTCGATG TGTACGAGGC GATCGAGGAA TGCGCGGATC TTTTGGAACA ATATGGCGGG CACACTTTTG CTGCGGGGCT CACATTGCCG CTCGATAATG TGGAAGCATT TAAAATGCGA TTTAATGAAA TCGTGAGTAG CCGCATTCAG CCCGACCAGC TCGTGCCGAT GATCAATGTG GATATGCTGC TGGAACTGGA AGCGATTACG CCTAAGTTTT ATAATATCCT TCGCCAGATG GGGCCGTTCG GGCCGGGGAA CATGACGCCG GTTTTCGAGT CACGCAATAT GACGCTCGTC GGTCGGCCGA TGTTGATGAA GGAAAAGCAT ATCAAATTTG ACGTGAAGCA AAACAACTCG GCGGTATTTA CGGCCGTGGG CTTCGGAATG GGGCATTTTT ATCCTGATAT CGTCAATGGA AGGCCGTTCT CGATCTGCTA TTGCCTCGAA GAGAACCATT TCCGTGACAA GAAAACCTTG CAGCTGTCGT TGAAAGACAT TAAGCTGCAT TAA
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Protein sequence | MIEKRWIHHP PFTSEQEQVA QSLAESLKVS PSLATLLVQR GILDFDQSRD FFRPDIRHLH DPFLMADMEK AVERLIKAID SNEKILVYGD YDVDGTTSVA LFYGFLKRIY PNLDYYIPDR YEEGYGVSWQ GVEWAHANGY TLIVTLDCGV KSVDKVTAAL EKGIDFIICD HHRPGDELPP AAAVLDPKRE DCLYPYKELT GCGVGFKLLQ AFCVKQVLDP ETLYDYLDLL VVSIASDIVP ITGENRVLAF YGLQRLNAQP RTGIKALIQI SGMTGALDIT NVVFGLGPRI NAAGRIKHAK EAVRLLLSEI EEEAISFAEE INKHNSERRN FDSSITEQAL FMIENDEWFS NAKSTVLYKE DWHKGVIGIV ASRCIEKYHR PTIILTHSHG KAAGSARSVP GFDVYEAIEE CADLLEQYGG HTFAAGLTLP LDNVEAFKMR FNEIVSSRIQ PDQLVPMINV DMLLELEAIT PKFYNILRQM GPFGPGNMTP VFESRNMTLV GRPMLMKEKH IKFDVKQNNS AVFTAVGFGM GHFYPDIVNG RPFSICYCLE ENHFRDKKTL QLSLKDIKLH
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