Gene Dfer_3975 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_3975 
Symbol 
ID8227571 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp4826125 
End bp4828581 
Gene Length2457 bp 
Protein Length818 aa 
Translation table11 
GC content54% 
IMG OID644931817 
Productpeptidase S45 penicillin amidase 
Protein accessionYP_003088344 
Protein GI255037723 
COG category[R] General function prediction only 
COG ID[COG2366] Protein related to penicillin acylase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.622551 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGTTTG TAAAGGCAAT TTTATTCATC GCGATCACCG CAGGGCTCGT TTATGTGCTC 
GACAGACGCT GGGACCCCGC TCCCGCGATG GGGCCGTTTC TCAGCCCGTT TTGCGGACTT
TGGCAGAACA GCGAGAAAGT CAAGGACCCT AAAACCAAAG TGGTGCTGCA ACTCGACAGC
CTGCACGACG AGGTGACCAT CCGTTTCGAC GAATACGGCG TACCGCATAT TTTTGCCAAA
AACGACTTCG ATCTTTTCTA CGCGCAAGGT TACATCACCG CCAAGGACCG GCTTTGGCAA
ATGGACCTCC AGACACGCGC TGCGGCCGGC CGACTTTCTG AAATCCTCGG TCCGGCCACC
CTGCCGATGG ACCAGCAAAG CCGCAGGCTC GGAATGGGCT ACGGCGCCGA GGCAAACCTG
AAAGTGGCGA TGACCGACCC GCGTTCGCGA GAGGCGTTAC TCGGCTACAC CGCCGGCGTG
AATGCATTCA TCCGGCAGCT CGACCCGAAA GATTACCCCA TTGAATTCAA ACTTTTGGGA
TACAAACCCG AGGCCTGGAA GCCGATTAAC ACCATGTACA TGCTCGAACA AATGACGCTC
ACACTAGCCG GGCGTTCCAA CGAGCAGGCC ATGACCAATG CATTGAAAAA GTACGGGCAG
GAAACCATCG CCCAGCTCTT CCCCGACTAC CCGTTGTTGC AGGAAAGCCC GATTATTCCG
TCCGGCACCG CCTGGAACTT CCCCAAACTT CCCGTTCCCA AGTCCGTGCC GCCGATGATA
CCGGGCGATA GCGTCGCATT ATCCGCAAAA CCTTTGACCG CATTGCCGCC CCGTGCGCCC
AAAGAGGAAG GCATTGGCAG CAACAACTGG GCCGTGAGTG CCGAAAAGTC CATTACGGGC
TACCCTATTC TGGCCAACGA CCCGCACCTC GAACTATCGC TCCCGTCGAT CTGGTACCAG
GTGCAGCTGC ATTCGCCGGA TGTGAATGTG TACGGCGTGT CGCTGCCGGG CATTCCGAGT
GTGATCATCG GCTTCAACCA GCATGTGGCG TGGGGCGTTA CCAATGTAGA TGCCGATGTT
TTTGATTTAT ATAAAATCAA GTTCAAAAAT GAATACCGGA ACTTCTATTG GCATGATAAT
CAATGGAAAC CAACCCACAA GCGTGAAGAA ATTATCCATG TGAAAGGTCA GCTGAGGCCC
TATCGCGAGC AAATCATTTA CACCCACCAC GGGCCAGTCA CCGATTCGGA CGGCACATTT
GGGGATTTGC CCAACCTGGC TATTAAATGG ATCGGCCATG AGCCGGGCAA CAGTTTCATT
ACCTTTTATG AGTTAAACAA GGCCAAAACC TCCGACGACT ACCGCAAGGC CCTCACGCAT
TATGTAGGAC CTGCGCAGAA TTTCGTGTTT GCGGATAATG AGAAGAACAT TGCCATTACC
GTAAATGGAA AAATCCCTTT GAAATATAAG GAACAGGGCA AATTTGTGCT CGATGGCTCG
TTGCCGGCCA ACGACTGGCA GGGCTGGATT CCCGCGGAGC AGAATCCGTT CGTAAAAAAC
CCACCGCGCG GTTTTGTAAG CAGCGCCAAC CAATCATCGG CCGACACCAC TTATCCTTAT
TATATCAATT GGAGCTTCGC GCCGCCCGAG CGCGCCATCC GCATCAATGA GCGCCTCCAA
GCGATGAACA GCGCCAATGC CGATAGCCTC AGAATGCTCC AAAACGACAA TTTCAGCGTG
TTGGCGCGCA CATTACTTCC CAAATTGCTC GGCATTCTCG AAACGCGCCC GCTGAGCCCG
AAGCAGAAGG CCGCCCGTAT CCTGCTTTCA AACTGGAATT ATCAGAACTC CCCGGAATCC
ATCGCCGCGT CTATCTTCGA AACCTGGTTT CCACTGCTAG GCCAGGCCAT CTGGAGCGAC
GATTTTTCCT CTGCCGAAAG CCCGATGGAA TATCCCTCGC GCGACCGGAC GCTTTACCTG
ATCTTAAAAC AGCCGAACGA AAAGTGGTTC GATAACGTGA ACACGCCCGA GAAAGAGACA
TTACCCGACC TGGTGTACCA GAGCTTCAAT GCCTCGCTTG ATACGCTCAC TGCCCGCAAG
GGCGCTATGA GCCCTGAGTG GCAATGGTCG AAGGTGAAAG ATGCCGAAAT AAGGCATTTG
AGCCGCAGCA TTAAACCCTT CAACGCGCCA CCGCTGTTAA CCGGCGGCGG CAGCAGCATT
GTGAATGCCA TGACGAAGCG AAAGGGGCCA TCCTGGCGGA TGGTGGTGGA ACTGGGGCCG
ACGCCCCGGG CGTATGGCAT CTTCCCGGGC GGTCAGTCAG GAAATCCGGG TAGCCCTTAT
TACCTCAATT TGCTGGAAAA GTGGGAGAAA GGCGAGCTGA ATGAGTTAAT CTACCTCACA
TCGCCCGACC AGAAAGTGCC GCGTCTCGCG TCGAGTCTTG TATTGCAAAA ACGTTAA
 
Protein sequence
MKFVKAILFI AITAGLVYVL DRRWDPAPAM GPFLSPFCGL WQNSEKVKDP KTKVVLQLDS 
LHDEVTIRFD EYGVPHIFAK NDFDLFYAQG YITAKDRLWQ MDLQTRAAAG RLSEILGPAT
LPMDQQSRRL GMGYGAEANL KVAMTDPRSR EALLGYTAGV NAFIRQLDPK DYPIEFKLLG
YKPEAWKPIN TMYMLEQMTL TLAGRSNEQA MTNALKKYGQ ETIAQLFPDY PLLQESPIIP
SGTAWNFPKL PVPKSVPPMI PGDSVALSAK PLTALPPRAP KEEGIGSNNW AVSAEKSITG
YPILANDPHL ELSLPSIWYQ VQLHSPDVNV YGVSLPGIPS VIIGFNQHVA WGVTNVDADV
FDLYKIKFKN EYRNFYWHDN QWKPTHKREE IIHVKGQLRP YREQIIYTHH GPVTDSDGTF
GDLPNLAIKW IGHEPGNSFI TFYELNKAKT SDDYRKALTH YVGPAQNFVF ADNEKNIAIT
VNGKIPLKYK EQGKFVLDGS LPANDWQGWI PAEQNPFVKN PPRGFVSSAN QSSADTTYPY
YINWSFAPPE RAIRINERLQ AMNSANADSL RMLQNDNFSV LARTLLPKLL GILETRPLSP
KQKAARILLS NWNYQNSPES IAASIFETWF PLLGQAIWSD DFSSAESPME YPSRDRTLYL
ILKQPNEKWF DNVNTPEKET LPDLVYQSFN ASLDTLTARK GAMSPEWQWS KVKDAEIRHL
SRSIKPFNAP PLLTGGGSSI VNAMTKRKGP SWRMVVELGP TPRAYGIFPG GQSGNPGSPY
YLNLLEKWEK GELNELIYLT SPDQKVPRLA SSLVLQKR