Gene Dfer_3965 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_3965 
Symbol 
ID8227560 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand- 
Start bp4812344 
End bp4812949 
Gene Length606 bp 
Protein Length201 aa 
Translation table11 
GC content52% 
IMG OID644931806 
Producttranscriptional regulator, TetR family 
Protein accessionYP_003088334 
Protein GI255037713 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value0.396199 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.986895 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGTAG ACAAAGTTAA AAAGCGCGAT CGCGAGCGCA CAAAGAGTAA AATACTCAAG 
GCGGTCGGTG AAGTAATCGA ACAGCATGGC ACCGAAAAGG TGGGCGTAAA TTTGATCGCC 
CGTACCGCCG GAGTAAACAA AGTATTGATT TACAGATACT TTGAAAGCGT AGACGGCCTG 
ATGGAACAGT ATGTCAGGTC GGGAGAGTAC ACGTCAACCC TCAGTACCGA TTACATCGAC 
AACATTCCCG AGCTCACGCC CGACGAACGG AACAAGGCTC TCACGTCCCT CATGCACACT 
TTCACCAACG ATCTGCGCCA ACGCAAGGCC ACCCGTGACC TGCTGCGCTG GGAGATCGGC 
ACCGGAAAGT CGATGCTATC CGACGCCCGC AACCAGATTG CGACCCGGAT CCTGAACAAA 
ATAGGCGACC TGCCCTATTA CAATGACACC AGCGCACTGA TCGCATTCAT TTCAGCAGGC 
ATTTATTTCC TGACCATCTC CTCCGATTAC CGTGAAAAAA TGCTCGACGT GGACCTTCAA 
ACCGATGAAG GCTGGAAACG CATCGAGCGT GTGATCGACA GTATTATCTC GGACGTCCGG 
GGTTGA
 
Protein sequence
MKVDKVKKRD RERTKSKILK AVGEVIEQHG TEKVGVNLIA RTAGVNKVLI YRYFESVDGL 
MEQYVRSGEY TSTLSTDYID NIPELTPDER NKALTSLMHT FTNDLRQRKA TRDLLRWEIG 
TGKSMLSDAR NQIATRILNK IGDLPYYNDT SALIAFISAG IYFLTISSDY REKMLDVDLQ 
TDEGWKRIER VIDSIISDVR G