Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_3903 |
Symbol | |
ID | 8227498 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | + |
Start bp | 4748297 |
End bp | 4750597 |
Gene Length | 2301 bp |
Protein Length | 766 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 644931744 |
Product | penicillin-binding protein 1C |
Protein accession | YP_003088272 |
Protein GI | 255037651 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG4953] Membrane carboxypeptidase/penicillin-binding protein PbpC |
TIGRFAM ID | [TIGR02073] penicillin-binding protein 1C |
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Plasmid Coverage information |
Num covering plasmid clones | 31 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGAAAA ACCGGGTCAG AAAGGCATTG CTGGCATTAA TTTGCCTCAT AGCCCTTTTT TTCGCCCTCG ACCTGGTATT TCCTTTCAAA CCAAACATTC ATTACGCCAC CCAGATCACC GACCGCGAAG GCCGCGTTAT TCATGCATTT CTGAGCAGGG AGGATAAATG GCGGCTCTAT TCGAATGTGG ATGAGATTAC GCCGCTACTC CGCAAGACGC TGATTTATAA GGAAGACCAG TATTTTTACT ATCATCCTGG TGTTAATCCG TTTGCCGTGG TGCGTGCGGC TGCAAGAAAT GTTTTTTCAG GGAAACGAAC GTCAGGGGCG TCCACGATTA CCATGCAGGT CGTGCGGCTG ATGGACCCGC GTCCGCGGAC TTACCTGAAC AAGTTCATCG AAATGTGGCA CGCTGTTCAG CTGGAAATGC ATTATTCCAA AGCGGAGATC CTGCAATTTT ATATCAACCT TGTGCCTTAT GGAGGTAATA TCGAGGGCAT CAAAGCGGCC TCGCTGCTCT ATTTTGGAAA GGCACCGCAG TTGCTGAGCC TGGCGGAGAT TACCGCGCTG ACGATCGTGC CCAACCGTCC GTCGGGCCTC CGCCCGGGTA CACGCAATGA TGCGCTGCGC GAGGCGCGCA ACAGCTGGCT GAAACGGTTT CAGGAGGATG GCCTGTTCGA CACCCCGGTG ATCCGGGATG CATTGGCAGA GCCGCTGAAC ATCCGCAGGC TGCAAACGCC GCGCCTGGCC CCGCATCTTT CGATCCGCCT CAAACAGCAG TTTCCCGACG AGCCCGTGAT CCGCACCCAT GTGAACATGC AGGCGCAAAG CCAGATCGAG GAACAGGTCA AAAATTATAT CAACCGGCGG CAACTGATGA ATATCCACAA TGCCGCCGTG CTGGTCGTGA ACAACGAAAC CATGGAAGTG GAGGCTTACG TGGGCTCGGC CGATTTCAAT AATCCGTTCG ACGGCGGGCA GGTAGATGGC GTGAGGGCGG TGCGTTCGCC CGGCAGCACG CTGAAACCGC TATTGTACGC TGCCGCATTC GACGCAGGCA TGATCACGCC GAAATCAGTT CTGAACGACG TGCCCGGCAA TTTCAGCGGC TATGAGCCTG AAAATTTCGA CAAGCATTTC AATGGCGCCG TCACGACAGA GTTTGCTTTG GCCAACTCGC TTAACATTCC CGCTGTGAAG GTTTTGAAGG AAATCGGGAC ACCCGCATTG ATCGCCAAAC TGCGTAAAGC GCGTTTCAAA ACCGTGGATA AGCAAGCCAA AAACCTCGGC CTGTCGATGA TTCTGGGAGG CTGCGGGGTT ACCCTGGAAG AGCTGACGCG GCTGTTTGCC GCATTTGCCA ATGAAGGGAA ACTGCGGAAC CTGCGCTTAT CGGGCGCCGA TGTTCAGGAT AAAAACGGGA CGACTTTTTT ATCGGAGGAA GCCACTTTCC TCACCACGGG CATCCTCACG CAGATTACCC GGCCCGACCT GCCCACGAAT TTTGATAATA CCTATCATTT GCCGCGCATT GCGTGGAAAA CCGGAACATC GTACGGTAAA CGCGATGCGT GGAGCATCGG CTATAACCGC CGGTACACAG TGGGCGTTTG GGTGGGTAAT TTTTCGGGGG AGGGCGTGCC GGAACTGAGC GGGGCCAATA CGGCAACGCC ACTGCTGTTT TCGATATTCA ATGCGCTGGA TTACAACTCG CCGAAGGGCT GGTACAAAAC TCCGGCTAAT ATTTCAACCC GCAACGTTTG CCCCGTCAGC GGCGACATTC CGTCCGATTT CTGTGATCAC CAGGTGCCCG ACCAGTACAT CTTGGGGGTG TCTGCCTATC ATAAATGCCA GCATATGCGC TGGGTGTTTA CGGATGCGAA AGGTAAAATG TCGTACTGCA CCTATTGCCT CCCTGAAAGC GGGTTTGAGA AAAAGGCTTA TCCCAACCTT GCGCCGGAGT TGATCGCGTT TTATGAAATG CAGAAGTTGC CTTATCCGAA GATTCCACCG CATAACCCGC TGTGTGAAAG GGTTTTTCAC GAGGGCGCCC CGCTGATCGT CAGCCCGAAC GACGGCAGCG AATACTACAT TCGCAAGGAT GAGCCGCAGC AGATCCAGCT CGCCTGCCAG GCCGCGAACG ACGTCCAGGA GGTTTATTGG TATATCAATG ATAAGTTATT CCAAAAGTCA TCCCCGCAGG AAAGTATCTT CCTAACCCCG CCGCTGGGGC GTGTAAAGGT TTCGTGCAGC GACGATAAAG GGCGCAATGC GGACGTGTGG ATTGTTGTGA AACGGATGTA A
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Protein sequence | MKKNRVRKAL LALICLIALF FALDLVFPFK PNIHYATQIT DREGRVIHAF LSREDKWRLY SNVDEITPLL RKTLIYKEDQ YFYYHPGVNP FAVVRAAARN VFSGKRTSGA STITMQVVRL MDPRPRTYLN KFIEMWHAVQ LEMHYSKAEI LQFYINLVPY GGNIEGIKAA SLLYFGKAPQ LLSLAEITAL TIVPNRPSGL RPGTRNDALR EARNSWLKRF QEDGLFDTPV IRDALAEPLN IRRLQTPRLA PHLSIRLKQQ FPDEPVIRTH VNMQAQSQIE EQVKNYINRR QLMNIHNAAV LVVNNETMEV EAYVGSADFN NPFDGGQVDG VRAVRSPGST LKPLLYAAAF DAGMITPKSV LNDVPGNFSG YEPENFDKHF NGAVTTEFAL ANSLNIPAVK VLKEIGTPAL IAKLRKARFK TVDKQAKNLG LSMILGGCGV TLEELTRLFA AFANEGKLRN LRLSGADVQD KNGTTFLSEE ATFLTTGILT QITRPDLPTN FDNTYHLPRI AWKTGTSYGK RDAWSIGYNR RYTVGVWVGN FSGEGVPELS GANTATPLLF SIFNALDYNS PKGWYKTPAN ISTRNVCPVS GDIPSDFCDH QVPDQYILGV SAYHKCQHMR WVFTDAKGKM SYCTYCLPES GFEKKAYPNL APELIAFYEM QKLPYPKIPP HNPLCERVFH EGAPLIVSPN DGSEYYIRKD EPQQIQLACQ AANDVQEVYW YINDKLFQKS SPQESIFLTP PLGRVKVSCS DDKGRNADVW IVVKRM
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