Gene Dfer_3903 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_3903 
Symbol 
ID8227498 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp4748297 
End bp4750597 
Gene Length2301 bp 
Protein Length766 aa 
Translation table11 
GC content54% 
IMG OID644931744 
Productpenicillin-binding protein 1C 
Protein accessionYP_003088272 
Protein GI255037651 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG4953] Membrane carboxypeptidase/penicillin-binding protein PbpC 
TIGRFAM ID[TIGR02073] penicillin-binding protein 1C 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGAAAA ACCGGGTCAG AAAGGCATTG CTGGCATTAA TTTGCCTCAT AGCCCTTTTT 
TTCGCCCTCG ACCTGGTATT TCCTTTCAAA CCAAACATTC ATTACGCCAC CCAGATCACC
GACCGCGAAG GCCGCGTTAT TCATGCATTT CTGAGCAGGG AGGATAAATG GCGGCTCTAT
TCGAATGTGG ATGAGATTAC GCCGCTACTC CGCAAGACGC TGATTTATAA GGAAGACCAG
TATTTTTACT ATCATCCTGG TGTTAATCCG TTTGCCGTGG TGCGTGCGGC TGCAAGAAAT
GTTTTTTCAG GGAAACGAAC GTCAGGGGCG TCCACGATTA CCATGCAGGT CGTGCGGCTG
ATGGACCCGC GTCCGCGGAC TTACCTGAAC AAGTTCATCG AAATGTGGCA CGCTGTTCAG
CTGGAAATGC ATTATTCCAA AGCGGAGATC CTGCAATTTT ATATCAACCT TGTGCCTTAT
GGAGGTAATA TCGAGGGCAT CAAAGCGGCC TCGCTGCTCT ATTTTGGAAA GGCACCGCAG
TTGCTGAGCC TGGCGGAGAT TACCGCGCTG ACGATCGTGC CCAACCGTCC GTCGGGCCTC
CGCCCGGGTA CACGCAATGA TGCGCTGCGC GAGGCGCGCA ACAGCTGGCT GAAACGGTTT
CAGGAGGATG GCCTGTTCGA CACCCCGGTG ATCCGGGATG CATTGGCAGA GCCGCTGAAC
ATCCGCAGGC TGCAAACGCC GCGCCTGGCC CCGCATCTTT CGATCCGCCT CAAACAGCAG
TTTCCCGACG AGCCCGTGAT CCGCACCCAT GTGAACATGC AGGCGCAAAG CCAGATCGAG
GAACAGGTCA AAAATTATAT CAACCGGCGG CAACTGATGA ATATCCACAA TGCCGCCGTG
CTGGTCGTGA ACAACGAAAC CATGGAAGTG GAGGCTTACG TGGGCTCGGC CGATTTCAAT
AATCCGTTCG ACGGCGGGCA GGTAGATGGC GTGAGGGCGG TGCGTTCGCC CGGCAGCACG
CTGAAACCGC TATTGTACGC TGCCGCATTC GACGCAGGCA TGATCACGCC GAAATCAGTT
CTGAACGACG TGCCCGGCAA TTTCAGCGGC TATGAGCCTG AAAATTTCGA CAAGCATTTC
AATGGCGCCG TCACGACAGA GTTTGCTTTG GCCAACTCGC TTAACATTCC CGCTGTGAAG
GTTTTGAAGG AAATCGGGAC ACCCGCATTG ATCGCCAAAC TGCGTAAAGC GCGTTTCAAA
ACCGTGGATA AGCAAGCCAA AAACCTCGGC CTGTCGATGA TTCTGGGAGG CTGCGGGGTT
ACCCTGGAAG AGCTGACGCG GCTGTTTGCC GCATTTGCCA ATGAAGGGAA ACTGCGGAAC
CTGCGCTTAT CGGGCGCCGA TGTTCAGGAT AAAAACGGGA CGACTTTTTT ATCGGAGGAA
GCCACTTTCC TCACCACGGG CATCCTCACG CAGATTACCC GGCCCGACCT GCCCACGAAT
TTTGATAATA CCTATCATTT GCCGCGCATT GCGTGGAAAA CCGGAACATC GTACGGTAAA
CGCGATGCGT GGAGCATCGG CTATAACCGC CGGTACACAG TGGGCGTTTG GGTGGGTAAT
TTTTCGGGGG AGGGCGTGCC GGAACTGAGC GGGGCCAATA CGGCAACGCC ACTGCTGTTT
TCGATATTCA ATGCGCTGGA TTACAACTCG CCGAAGGGCT GGTACAAAAC TCCGGCTAAT
ATTTCAACCC GCAACGTTTG CCCCGTCAGC GGCGACATTC CGTCCGATTT CTGTGATCAC
CAGGTGCCCG ACCAGTACAT CTTGGGGGTG TCTGCCTATC ATAAATGCCA GCATATGCGC
TGGGTGTTTA CGGATGCGAA AGGTAAAATG TCGTACTGCA CCTATTGCCT CCCTGAAAGC
GGGTTTGAGA AAAAGGCTTA TCCCAACCTT GCGCCGGAGT TGATCGCGTT TTATGAAATG
CAGAAGTTGC CTTATCCGAA GATTCCACCG CATAACCCGC TGTGTGAAAG GGTTTTTCAC
GAGGGCGCCC CGCTGATCGT CAGCCCGAAC GACGGCAGCG AATACTACAT TCGCAAGGAT
GAGCCGCAGC AGATCCAGCT CGCCTGCCAG GCCGCGAACG ACGTCCAGGA GGTTTATTGG
TATATCAATG ATAAGTTATT CCAAAAGTCA TCCCCGCAGG AAAGTATCTT CCTAACCCCG
CCGCTGGGGC GTGTAAAGGT TTCGTGCAGC GACGATAAAG GGCGCAATGC GGACGTGTGG
ATTGTTGTGA AACGGATGTA A
 
Protein sequence
MKKNRVRKAL LALICLIALF FALDLVFPFK PNIHYATQIT DREGRVIHAF LSREDKWRLY 
SNVDEITPLL RKTLIYKEDQ YFYYHPGVNP FAVVRAAARN VFSGKRTSGA STITMQVVRL
MDPRPRTYLN KFIEMWHAVQ LEMHYSKAEI LQFYINLVPY GGNIEGIKAA SLLYFGKAPQ
LLSLAEITAL TIVPNRPSGL RPGTRNDALR EARNSWLKRF QEDGLFDTPV IRDALAEPLN
IRRLQTPRLA PHLSIRLKQQ FPDEPVIRTH VNMQAQSQIE EQVKNYINRR QLMNIHNAAV
LVVNNETMEV EAYVGSADFN NPFDGGQVDG VRAVRSPGST LKPLLYAAAF DAGMITPKSV
LNDVPGNFSG YEPENFDKHF NGAVTTEFAL ANSLNIPAVK VLKEIGTPAL IAKLRKARFK
TVDKQAKNLG LSMILGGCGV TLEELTRLFA AFANEGKLRN LRLSGADVQD KNGTTFLSEE
ATFLTTGILT QITRPDLPTN FDNTYHLPRI AWKTGTSYGK RDAWSIGYNR RYTVGVWVGN
FSGEGVPELS GANTATPLLF SIFNALDYNS PKGWYKTPAN ISTRNVCPVS GDIPSDFCDH
QVPDQYILGV SAYHKCQHMR WVFTDAKGKM SYCTYCLPES GFEKKAYPNL APELIAFYEM
QKLPYPKIPP HNPLCERVFH EGAPLIVSPN DGSEYYIRKD EPQQIQLACQ AANDVQEVYW
YINDKLFQKS SPQESIFLTP PLGRVKVSCS DDKGRNADVW IVVKRM