Gene Dfer_3898 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_3898 
Symbol 
ID8227493 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp4742313 
End bp4744232 
Gene Length1920 bp 
Protein Length639 aa 
Translation table11 
GC content52% 
IMG OID644931739 
Productproton-translocating NADH-quinone oxidoreductase, chain L 
Protein accessionYP_003088267 
Protein GI255037646 
COG category[C] Energy production and conversion
[P] Inorganic ion transport and metabolism 
COG ID[COG1009] NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit 
TIGRFAM ID[TIGR01974] proton-translocating NADH-quinone oxidoreductase, chain L 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCGCAT CATTACTCAT CCTGATTCCG CTGCTGCCGC TCGTTGGCTT TCTGATCAAC 
GGAATCGGAT TTCCCAATAT TCCCAAAGGC GCAGTCGGCA TTATCGGAAC GTTGGCAGTT
GTTGCCAGCT TCGTATTGTC CGTCATGACG TTCAATGCAT TCGTTGCAGC CGGCAGCCAG
CCGTTCGTCC TGCCGCTTTT CGACTGGATC ACCGTCGGCG ACCTCCACAT CCCGTTCTCA
TTCCAGATCG ACCAGCTGTC ATTGCTCATG CTGATGATCA TCACCGGCGT AGGCTCGCTG
ATCCACATTT ATTCGATTGG CTACATGCAC CACGACTCAG GTTTCGGCAA GTTTTTCGCT
TACCTGAACC TGTTTTTGTT TTTCATGCTC CTGCTGGTGC TCGGCTCGAA CTACGTGATC
ATGTTCATCG GCTGGGAAGG TGTGGGACTT TGTTCTTACC TGCTCATCGG CTTCTGGAAC
AAGAACACCA ACTACAACAA TGCAGCCCGC AAGGCATTCA TTATGAACCG TGTGGGTGAC
CTTGGGTTCC TGCTCGGGAT CTTCACGATC ATCGCCACAT TCGGTTCGGT GGAATATACG
GAGGTTTTCA GCAAGGCTGC TGCGGGCTTC CAGGTGGGTG ACCCGGTGAT TATCACCATT
ACATTATTCC TGTTTGTTGG AGCAATGGGT AAATCGGCGC AGATTCCCTT GTATACCTGG
CTTCCTGACG CGATGGCCGG CCCTACGCCT GTATCCGCAC TGATCCACGC CGCTACGATG
GTTACCGCGG GTATTTACAT GGTGATCCGC TCCAACGTGC TGTATTCCCT CGCGCCTTCC
ACGCTCGAAA TCGTAGGCAT TATCGGTGGC GCCACCGCAT TGTTCGCCGC GTCGATCGGT
CTCTTGCAAA ACGATATCAA GAAAGTGCTC GCGTACTCTA CGGTGAGCCA GCTGGGTTAT
ATGTTCATGG GTCTGGGTGC GATGGCCTAC TCGGCGTCGA TGTTCCATGT GATCACCCAC
GCATTCTTCA AAGCATTGCT CTTCCTCGGC GCCGGTAGCG TTATCCACGC CATGTCCGAC
GAGCAGGATA TCCGTTCAAT GGGTGGATTG CGCAAGAAAT TGCCTGTTAC ATTCCTTACA
TTCCTTATCG CCACCATCGC GATTTCAGGT ATCCCGCCAT TTGCAGGTTT CTTCTCGAAA
GATGAGATCC TTGCGCATGT TTTTGAACAC AACAAAATCC TCTGGGTAAT TGGTGTGCTG
GGTTCAGTTA TGACTTCCTT CTACATGTTC CGCCTATTGT TCCTGACTTT CTTCGGTACA
TTCCGCGGCA CGCATGAGCA AGAGCACCAT TTGCATGAAT CACCGGCTTC TATGACCGTT
CCGCTGATCA TCCTCGCCAT TCTTTCGGCC GCAGGTGGTT TTATCGGCGT TCCCGAAGCA
TTGCACGGTT CGCATCAGCT GGCGCAGTTT ATGGCGCCGC TTTACGACCT GGCCAAAACC
GCCAATCCGG CAGCATTTGC ACATACTTCG CTTTCGCATT CCGAAGAATA TATGCTGATG
GCCATTTCGG TGGCGGCGGC GTTGATCTCG GCCATTGCGG CTTATGTGAT GTATGTGCAA
AAAGGCGCGG TGCCGGCAGC GGATACGGAG GAAAAATCGG GCTTGCAGCG GGTTATTTAC
AACAAATACT ACGTGGATGA GCTGTACGAC TCGGTATTTG TAAAACCTGT AAAAGTGCTT
TCCAACTTCC TGTACGCCGC GGGCGAATTT GCGATCGACC TTATCATCGA TGCGGTGGTG
AAGCTGGTGG GCCTGTTTGC GAAATTGTTG AGGAAAACCC AAACCGGCTC CACCGGCGAA
TATGTGTTCG CAATGGTGAT CGGCATTGTG GTCATCCTGT TCTGGAAGCT GTTACTCTGA
 
Protein sequence
MSASLLILIP LLPLVGFLIN GIGFPNIPKG AVGIIGTLAV VASFVLSVMT FNAFVAAGSQ 
PFVLPLFDWI TVGDLHIPFS FQIDQLSLLM LMIITGVGSL IHIYSIGYMH HDSGFGKFFA
YLNLFLFFML LLVLGSNYVI MFIGWEGVGL CSYLLIGFWN KNTNYNNAAR KAFIMNRVGD
LGFLLGIFTI IATFGSVEYT EVFSKAAAGF QVGDPVIITI TLFLFVGAMG KSAQIPLYTW
LPDAMAGPTP VSALIHAATM VTAGIYMVIR SNVLYSLAPS TLEIVGIIGG ATALFAASIG
LLQNDIKKVL AYSTVSQLGY MFMGLGAMAY SASMFHVITH AFFKALLFLG AGSVIHAMSD
EQDIRSMGGL RKKLPVTFLT FLIATIAISG IPPFAGFFSK DEILAHVFEH NKILWVIGVL
GSVMTSFYMF RLLFLTFFGT FRGTHEQEHH LHESPASMTV PLIILAILSA AGGFIGVPEA
LHGSHQLAQF MAPLYDLAKT ANPAAFAHTS LSHSEEYMLM AISVAAALIS AIAAYVMYVQ
KGAVPAADTE EKSGLQRVIY NKYYVDELYD SVFVKPVKVL SNFLYAAGEF AIDLIIDAVV
KLVGLFAKLL RKTQTGSTGE YVFAMVIGIV VILFWKLLL