| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_3834 |
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| Symbol | |
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| ID | 8227428 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | + |
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| Start bp | 4673054 |
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| End bp | 4674214 |
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| Gene Length | 1161 bp |
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| Protein Length | 386 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 644931674 |
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| Product | 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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| Protein accession | YP_003088203 |
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| Protein GI | 255037582 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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| TIGRFAM ID | [TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.440308 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.191924 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAAA GAGTAGCCAT TTTAGGTTCG ACCGGGTCCA TCGGCACCCA GGCCCTCGAA
GTGATCGCGG CCCATCCTGA CATTTTCTCC GTTTCGGTGC TCACCGCCGG CGGCAATGCG
GATTTGCTCA TTGAGCAGGC CGTCAAATTC AAGCCGGAGG AAGTGGTGAT TTGCAACGAA
GCACATTACG AAAGGGTAAA AGCTGCCCTT TTTCCATTCA ATATCAAAGT GTACAGCAGC
GCCTCTGCGC TGGTTTCGGT GGTAGAATCG GATCATGTGG ATGTGGTACT GACGGCCATG
GTAGGCTATG CCGGCCTCTT GCCGACCATT CACGCCATTA AAGCCGGAAA GGACATTGCA
CTAGCCAATA AAGAAACGCT CGTAGTGGCC GGTGAGCTGA TCACGGCATT GGCGAAGCAG
TATAATGTGC GTATTTATCC CGTTGATTCC GAGCATTCGG CCATATTCCA ATGCCTTGCG
GGCGAGCAGG ACAATGCGAT CGAGAAAATT ATATTAACCG CTTCCGGCGG TCCGTTCCGC
GGCAAGGACC GTGCTTTTCT CGCCAATGTA ACGAAAGCGC AGGCGCTCAA ACACCCGAAT
TGGAGCATGG GCGCCAAGAT CACGATCGAT TCGGCGACAT TGATGAACAA GGGTTTGGAA
GTAATCGAGG CGAAATGGCT GTTTGATCTG AATGCTTCGC AAATAGATGT CGTCGTTCAC
CCGCAGAGCA TCGTGCATTC GCTGGTACAG TTCGAAGATG GGAGCATCAA GGCCCAAATG
GGCCTGCCTG ATATGAAATT GCCCATTCAA TATGCATTGT ACTACCCGCA ACGCCTGAAA
TCCGACTTCC CGCGGTTCAA TTTCATCGAT TACCCGTCGC TCACCTTCGA GCAGCCCGAT
TTGGAAACAT TCCGCAACCT CGCCATCGCC TATGAGGCCC TTGAAAAAGG CGGAAATGCC
GCTTGTATCG TCAATGCAGC CAATGAAATT GCCGTTGACG CATTCCTGCA CGACAAGATT
GGTTTTCTGG ATATTTCGGA CGTTATTGTC GAGAGCCTGG CCAAAATCGC CTTCATCGGG
AATCCTTCGA TCGAGGATTA CGTTCAGACG AACGAGGCAA CCAGGCGTTA TGCTTCCGAA
ATGATTCAGG TCAAAGTTTA A
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| Protein sequence | MKKRVAILGS TGSIGTQALE VIAAHPDIFS VSVLTAGGNA DLLIEQAVKF KPEEVVICNE
AHYERVKAAL FPFNIKVYSS ASALVSVVES DHVDVVLTAM VGYAGLLPTI HAIKAGKDIA
LANKETLVVA GELITALAKQ YNVRIYPVDS EHSAIFQCLA GEQDNAIEKI ILTASGGPFR
GKDRAFLANV TKAQALKHPN WSMGAKITID SATLMNKGLE VIEAKWLFDL NASQIDVVVH
PQSIVHSLVQ FEDGSIKAQM GLPDMKLPIQ YALYYPQRLK SDFPRFNFID YPSLTFEQPD
LETFRNLAIA YEALEKGGNA ACIVNAANEI AVDAFLHDKI GFLDISDVIV ESLAKIAFIG
NPSIEDYVQT NEATRRYASE MIQVKV
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