Gene Dfer_3813 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_3813 
Symbol 
ID8227407 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp4650978 
End bp4652918 
Gene Length1941 bp 
Protein Length646 aa 
Translation table11 
GC content52% 
IMG OID644931653 
Productglucosamine-6-phosphate deaminase-like protein 
Protein accessionYP_003088182 
Protein GI255037561 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0363] 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase 
TIGRFAM ID[TIGR00502] glucosamine-6-phosphate isomerase 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.551853 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAGCTT CCAGCAATGG AAAAGGCACC ACCGGCACCA TAGGGCAACC CATTACCTAT 
GAAAAAATCC CGACGCAGAT TTTTGCCGAT TCGAAAGAGG CGTCCTATGC GGTTGCAAAA
GAGATCTCGG ACCTGATCCG TCAGAAACAA AAGGAAGGTA AGCCTTGCGT TCTGGGACTT
GCTACGGGTT CTTCGCCAAA GACCGTCTAC GCGATCCTGG TGCGCATGCA CCGTGAAGAA
GGTTTGAGTT TTAAAAATGT GATTTCTTTC AACCTGGATG AGTACTACCA AATGGAGCCT
GATTCCATTT ACAGCTACCA CCGGTTTATG AAAGAGCAAC TGTTCGACCA CGTCGACATT
CCGAAAGAAA ACTATTTCCT GCCGGATGGC ACCGTACCTG CGGCATTGCT CCGTGATTAC
TGTGCTTCGT ACGAAAATAA AATCAATGCG GTAGGCGGAC TGGATTTCCA GCTGCTCGGT
ATCGGGGGTA ACGGCCACAT CGGTTTCAAC GAACCGGGCT CGCTCATCAA CTCACATACC
CGCCTCATCA CCCTCGACCA TTCTACGCGC GCTGCGGCCA GCATGGAATT CGGTGGCTTG
CACAATGTAC CGCGCAAGGC AATCACATTG GGTGTGGCGC CTATCCTGAA TGCACGCCGG
GTGGTGTTGC TGGCCTGGGG TGAAAGAAAA GCGCAGGTAA TCAAAGGTGC CGTAGAAGGT
CCTGTAACCG AGCTGAACCC CGCTTCCTAC CTGCAAGCGC ATGCCGACGT GAGCTTTGTC
GTAGATGAAA GTGCTGCTTC CGAACTGACT CGCATTAAGA CGCCTTGGGC GGTGGATTCG
GTGATTTGGG ATAATAAAAT GATCAAGAAA GCGGTAACGC ATTTGTCGCA AACCTTGAAA
AAACCCATAC TGAAACTGAC CGACAAGGAC TACAACGACA ATGGTATGAG TGACTTGCTG
GCACAATATG GTGCTGGTTA TGAGATTAAT ATAAATGTAT TTAACCAATT GCAGCATACC
ATCACCGGCT GGCCGGGTGG TAAGCCTAAT GCGGACGATA CGCACCGTCC GGAGCGTGCA
CAGCCCGCGA AAAAACGCGT GTTGATTTTC AGCCCGCACC CGGATGACGA TATTATTTCA
ATGGGCGGTA CATTCCAGCG CCTCGTCGAT CAGGGTCATG AAGTGCATGT GGCCTACCAG
ACTTCGGGTA ACATCGCCGT AGCCGACGAT GAAGCATTGC GTTTCATTGA TTTTGTAGTC
GACTTCAACA CTGGCTTCGA CATCGAGAGC CCGAATGCGA ATAAGCTCTT CCTGGATGCA
AAGGAATTTT TGAGACATAC CAAAAACAGC GAGATCGATA GCCCCGAGGT TCGTAAGGTG
AAAGGCCTGA TCCGCCGTGG TGAAGCGAAA GCTACCTGCC GTTTTGTGGG CATTCCTACC
AGCCAGGCGC ATTTCCTCGA CATGCCGTTC TACGAAACCG GCACAGTCCA GAAAAAACCG
ATCGGCGAAG AAGATATCAA AATCATCGAA AACCTGATCG AGGAGGTCAA GCCGCACCAG
ATCTACGCCG CCGGCGACTT TGCCGATCCG CACGGAACGC ACAAAGTGTG CTGGGACGCG
ATCGAAGCCG CATTGCAGCG TTCGAAACAT AAGAATTTCA TGAAAGACTG CTGGGTGTGG
TTGTACCGCG GCGCGTGGGC TGAGTGGGAT ATTTATGAAA TCGAAATGGC GGTGCCGATG
AGCCCTGACC AGGTGCTGAA AAAACGCCAG GGAATTTTCA AACACCAGTC GCAGAAAGAC
GGTGTGGTGT TCCAGGGAGA AGATTCCCGC GAGTTCTGGC AACGTGCGGA GGAGCGCAAC
CGCGGCACCG CGCAACTCTA CGATTCCCTC GGCCTGGCCG AGTACGAAGC GATGGAAGCA
TTTGTACGCT GGAAGTTCTA A
 
Protein sequence
MQASSNGKGT TGTIGQPITY EKIPTQIFAD SKEASYAVAK EISDLIRQKQ KEGKPCVLGL 
ATGSSPKTVY AILVRMHREE GLSFKNVISF NLDEYYQMEP DSIYSYHRFM KEQLFDHVDI
PKENYFLPDG TVPAALLRDY CASYENKINA VGGLDFQLLG IGGNGHIGFN EPGSLINSHT
RLITLDHSTR AAASMEFGGL HNVPRKAITL GVAPILNARR VVLLAWGERK AQVIKGAVEG
PVTELNPASY LQAHADVSFV VDESAASELT RIKTPWAVDS VIWDNKMIKK AVTHLSQTLK
KPILKLTDKD YNDNGMSDLL AQYGAGYEIN INVFNQLQHT ITGWPGGKPN ADDTHRPERA
QPAKKRVLIF SPHPDDDIIS MGGTFQRLVD QGHEVHVAYQ TSGNIAVADD EALRFIDFVV
DFNTGFDIES PNANKLFLDA KEFLRHTKNS EIDSPEVRKV KGLIRRGEAK ATCRFVGIPT
SQAHFLDMPF YETGTVQKKP IGEEDIKIIE NLIEEVKPHQ IYAAGDFADP HGTHKVCWDA
IEAALQRSKH KNFMKDCWVW LYRGAWAEWD IYEIEMAVPM SPDQVLKKRQ GIFKHQSQKD
GVVFQGEDSR EFWQRAEERN RGTAQLYDSL GLAEYEAMEA FVRWKF