| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_3808 |
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| Symbol | |
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| ID | 8227402 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 4644789 |
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| End bp | 4646732 |
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| Gene Length | 1944 bp |
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| Protein Length | 647 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 644931648 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_003088177 |
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| Protein GI | 255037556 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.17095 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTATAA CGCCAGGAAA ATTATTAGCA ACAATTAATT CTCCCGAAGA TCTCCGAAAA
CTGGACAGTT CTCAGCTTCC GCAGGTTTGC AACGAGTTAA GGCAATTTAT TATAGACAAC
GTGTCCGTGT ACGGCGGGCA TTTCGGCGCT AGCCTCGGAG TGGTGGAACT GAGCGTAGCA
TTGCATTACG TTTTCAATAC GCCCGACGAT CAGCTTGTGT GGGACGTAGG TCACCAGGCT
TACGGGCATA AAATCCTTAC AGGTCGCCGC GACGACTTCC ATTCCAACCG CGTTTACGGC
GGGTTATCCG GTTTTCCCAA AAGAAAAGAG AGCATTTACG ATGCATTTGG TGTAGGTCAC
TCGTCGACAT CCATTTCGTC CGCGCTCGGA ATGGCGGTGG CATCAGCATT GGAAAAGAAC
TTCCAGCGCC AGCACATCGC GATCATCGGC GACGGTGCCA TGACGGCCGG TTTGGCCTTC
GAAGGCATGA ACCACGCCGG CGCCACGGAC TCCAATTTGC TGATCATCCT CAATGATAAC
TGCATGGCCA TCGACCCGAA CGTCGGTGCG CTGAAAGAAT ACCTGACCGA CATCACGACT
TCGCAGACTT ATAACAAGTT CAAAGACGAA GTCTGGAACC TGCTCGGCAA GATGAGTAAC
TTCGGCAAAA GTGCTCAGGA GATTGTTTCA AAAGTGGAGA CGGCCATGAA AACCGCCATT
CTTCGCCAGA GCAACCTGTT TGAATCGCTT GGCTTGCGCT ATTTCGGCCC GATTGATGGC
AACGATATCA GCCATCTCAC CGAAGTATTG AAAGACCTTA AAAACATCCC GGGTCCAAAG
CTGCTGCATT GCCTTACCGT AAAAGGAAAA GGCTACGGAC CGGCTGAAAA GGACCAAACG
AAATGGCATG CTCCCGGCGT TTTCGACAAA ATCACGGGGG AGATCAAGAA AAAAGTTTAC
GACACGCCTC AGGCGCCCAA ATACCAGGAT GTCTTCGGCC ATACCATTGT AGAACTGGCG
AAAGCAAATC CCAAAATTGT CGGTATCACG CCTGCCATGC CGTCCGGCTC GTCACTAAAC
ATCATGATGG AAGCCGTTCC TGAAAGGGCT TTCGACGTCG GCATCGCCGA ACAGCACGCT
GTTACTTTCT CGGCGGGCAT GGCTACACGC GGCGAAGTGG TCTATTGTAA CATTTATTCC
ACTTTCATGC AGCGCGCGTA CGATCAGGTC GTGCACGACG TATGCATTCA GGAACTGCCA
GTAATATTCT GTCTCGACAG GGCAGGCCTC GTAGGCGCCG ATGGCCCGAC ACACCATGGC
TTGTATGACA TTGCTTACAT GCGTTGTATT CCAAATATGG TGGTCGCCTC GCCGATGAAC
GAGCAGGAAC TACGGAACAT GATGTACACC GCCCAGCTGG AATCGTTTCA GTCAGGCAAA
AACGCATTCA CCATCCGCTA TCCAAGAGGC AATGGAGTAA TGCCGGATTG GAAAACACCA
TTCGAAGAAA TTCAGATTGG AAAAGGCCGC AAAGTCCGGA GTGGCAGCGA CCTTGCCATC
CTATCTCTCG GCCCGCTTGG AAACTTCGCG TTGCAGGCTT GTGAAGACTT AGAGAAACAA
GGCATTAGCG CTTCACTTTA TGATATGCGT TTTGCAAAGC CATTAGATGA GGCTCTGCTG
CACGAAATCT TCTCATCCTA TGAGAGAGTC ATCACACTGG AAGATGGCTG CGTGCAAGGC
GGATTTGGCA GCGCAGTGGT CGAGTTCATG GCTGACAATG GATACAGCAG CGCAATCAAA
CGTCTCGGCA TCGCAGATAC AATCATCGAA CACGGCGAAC CAGCCGAATT GTATCACGAA
TGCGGAATAG ATACAAAAGG GATTGTATCG GCTTCGGTAG AAGTGATGCA ACGCCGTTCC
CGTGTCGCCT CTTTAATGCA TTAG
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| Protein sequence | MLITPGKLLA TINSPEDLRK LDSSQLPQVC NELRQFIIDN VSVYGGHFGA SLGVVELSVA
LHYVFNTPDD QLVWDVGHQA YGHKILTGRR DDFHSNRVYG GLSGFPKRKE SIYDAFGVGH
SSTSISSALG MAVASALEKN FQRQHIAIIG DGAMTAGLAF EGMNHAGATD SNLLIILNDN
CMAIDPNVGA LKEYLTDITT SQTYNKFKDE VWNLLGKMSN FGKSAQEIVS KVETAMKTAI
LRQSNLFESL GLRYFGPIDG NDISHLTEVL KDLKNIPGPK LLHCLTVKGK GYGPAEKDQT
KWHAPGVFDK ITGEIKKKVY DTPQAPKYQD VFGHTIVELA KANPKIVGIT PAMPSGSSLN
IMMEAVPERA FDVGIAEQHA VTFSAGMATR GEVVYCNIYS TFMQRAYDQV VHDVCIQELP
VIFCLDRAGL VGADGPTHHG LYDIAYMRCI PNMVVASPMN EQELRNMMYT AQLESFQSGK
NAFTIRYPRG NGVMPDWKTP FEEIQIGKGR KVRSGSDLAI LSLGPLGNFA LQACEDLEKQ
GISASLYDMR FAKPLDEALL HEIFSSYERV ITLEDGCVQG GFGSAVVEFM ADNGYSSAIK
RLGIADTIIE HGEPAELYHE CGIDTKGIVS ASVEVMQRRS RVASLMH
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