Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_3807 |
Symbol | |
ID | 8227396 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | + |
Start bp | 4637388 |
End bp | 4639019 |
Gene Length | 1632 bp |
Protein Length | 543 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 644931642 |
Product | delta-1-pyrroline-5-carboxylate dehydrogenase |
Protein accession | YP_003088176 |
Protein GI | 255037555 |
COG category | [C] Energy production and conversion |
COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
TIGRFAM ID | [TIGR01236] delta-1-pyrroline-5-carboxylate dehydrogenase, group 1 |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.348767 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.341388 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGATAG GAATTTTCAA TGTGCCGGCG CTCAAAAACG AGCCGGTTAA AAGTTACGCG CCGGGTACGC CGGAGCGCGC AGAACTCAAA AAAGCGCTGG CCGATGCCCG TGCGAAGACC ATTGAGATAC CACAATATAT AGGTAGCGAA GAAATCTACT CCGGGAACAA GCAAAAGGTG TCGCCGCCGC ATGACCATCA GCACGTGCTG GGCTATTTTC ATGAGGGTTC GAAGGAAGAT GTCAGCAAAG CGATAGATGC TGCATTGGAG GCAAGGAAAA GCTGGGCTAC CCTCACATGG GAGCAGCGTG CAGCGATTTT CTTAAAAGCA GCGGAGCTCA TTGCCGGACC GTATCGCGCT GAAATGAATG CGGCTACGAT GTTGGGGCAA TCCAAAAATG CCTATCAGGC CGAGATTGAT TCGGCTTGTG AAATCATTGA CTTTCTGCGG CTTAATGTGA ACTTCATGCG GGATATTTAT GAAGAGCAGC CAATCTCTTC GGAGGGTGTC TGGAACCGGA TGGAGTATCG CCCGCTGGAA GGTTTCCTAT TTGCCATTAC GCCGTTCAAC TTTACGGCCA TTGCCGGAAA CCTGCCTGCT GCGCCTGCGT TGATGGGCAA TGTGGTGATC TGGAAGCCGG CATTTACCCA GGTATATGCA GCTAATGTGA TCATGAAAGT ATTCAAAGAA GCGGGGCTGC CGGATGGCGT TATTAATATG GTTTTGGTGG ATGGCCCGGT GGCCGGTGAC GTGATTTTCA AGCATCCTGA TTTCTCGGGT GTCCATTTTA CAGGCAGTAC CAAGGTGTTT CAAACGATCT GGAAAACGAT CGGGGAGAAT ATAGCTACTT ATAAGACATT TCCAAGAATC GTAGGCGAGA CGGGCGGTAA GGACTTTGTG CTGGCGCATA AGTCAGCCAA TGCAAAGGAA GTGGCTACCG GCCTGGTTCG TGGTGCATTC GAATACCAGG GCCAGAAATG CTCGGCGGCT TCACGGGCTT ATATTCCTTC CAATTTGTGG GAAGAGGTGA AAGGATTTAT GCTGGCTGAC CTTGCGGAGA TCAAAATGGG CGGTGTAGAG GACTTCTCGA ATTTCGTGAA TGCGGTCATC GACGAAAAAT CGTTCGACAA GATCGCTTCT TATATAGATG GGGCTAAGAC CAGCTCCGAC ACAGAAATCG TCGCAGGAGG CAATTTTGAC AAGAGTAAAG GCTATTTTGT GGAGCCGACC ATCATCCAGG CCTTCAAGCC GGATTATGTG ACGCTATGCG AGGAGATCTT CGGGCCGGTG CTTACTGTAT ATGTGTATGA TGAAAACGAG TTCGAGCAGA TCATCCCTGT GATCGATTCG ACTTCGCCTT ATGCATTAAC CGGTGCCGTG TTTGCGAAGG ACCGCTATGC GATTGAATAT GCGACGAGGC ATTTGGTGAA TGCAGCTGGT AACTTCTACA TTAATGACAA GCCGACGGGT GCCGTGGTAG GCCAGCAGCC ATTCGGCGGT GCGCGGGCAT CGGGTACAAA TGATAAGGCG GGATCGGTTT TGAACCTGCT CAGATGGGTA TCACCGCGGG CATTGAAAGA GACGCTTGTT TCGCCGAAAG ACTATAAATA TCCCTTCCTT TCCGGGGAAT AA
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Protein sequence | MSIGIFNVPA LKNEPVKSYA PGTPERAELK KALADARAKT IEIPQYIGSE EIYSGNKQKV SPPHDHQHVL GYFHEGSKED VSKAIDAALE ARKSWATLTW EQRAAIFLKA AELIAGPYRA EMNAATMLGQ SKNAYQAEID SACEIIDFLR LNVNFMRDIY EEQPISSEGV WNRMEYRPLE GFLFAITPFN FTAIAGNLPA APALMGNVVI WKPAFTQVYA ANVIMKVFKE AGLPDGVINM VLVDGPVAGD VIFKHPDFSG VHFTGSTKVF QTIWKTIGEN IATYKTFPRI VGETGGKDFV LAHKSANAKE VATGLVRGAF EYQGQKCSAA SRAYIPSNLW EEVKGFMLAD LAEIKMGGVE DFSNFVNAVI DEKSFDKIAS YIDGAKTSSD TEIVAGGNFD KSKGYFVEPT IIQAFKPDYV TLCEEIFGPV LTVYVYDENE FEQIIPVIDS TSPYALTGAV FAKDRYAIEY ATRHLVNAAG NFYINDKPTG AVVGQQPFGG ARASGTNDKA GSVLNLLRWV SPRALKETLV SPKDYKYPFL SGE
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