Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_3776 |
Symbol | |
ID | 8227362 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | + |
Start bp | 4592695 |
End bp | 4593426 |
Gene Length | 732 bp |
Protein Length | 243 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 644931608 |
Product | pseudouridine synthase |
Protein accession | YP_003088145 |
Protein GI | 255037524 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 45 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTAAAA AACCTTTTCG GGTTGTTTAC GAGGATAATC ACCTGATCAT CGTCAATAAG GAGCCTGGTA TCCTGGTTCA GGCCGATGTT ACCGGCGACG CATGTTTGCT GGATTTGGTA AAAGATTACA TCAAAGAAGC CTATAACAAG CCCGGAGCGG TGTTTTTGGG CACCGTGCAC CGGCTGGACC GACCCGTGAG CGGGCTCGTT GTATTTGCGC GCACATCCAA GGCGCTCGAA CGCATGAACG AGATTTTCCG GAAACGCGAT GTGCAAAAAA CCTATTGGGC AGTTGTAAAG AACAAACCGG CAGAAAAAAA GGGCAAATTG GTACATTGGC TGACTAAAAA CGAAGCCCGC AATGTCACCA CCGCGCACGA CGAGGAAGTG CCGGGCTCAC AGCGTGCGGA GCTTTCGTAC CGCTGGGTAG GCGAAATCAA CAAATTCCAC CTGCTGGAAG TAATGCCGGT TACCGGCCGC CCGCACCAGA TCCGCGTGCA GCTGGCCTCG ATGAACTGCC CCATTCGCGG CGACGTGAAA TACGGTTATC CCAAAGGCAA TCCCGACGGC AGCATCAACC TGCATGCACG CAGGCTGTAT TTCGAGCATC CCGTTAAAAA AGAGCCGATT ATCTGCCGCG CCGGTGTGCC AAACGACCCT TTTTGGGAAG AATTCTTAAC TTTGGATAAA GAGGTGATCA AACCCGAGCA CCTCGATTTC CTGCACGAAT AG
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Protein sequence | MAKKPFRVVY EDNHLIIVNK EPGILVQADV TGDACLLDLV KDYIKEAYNK PGAVFLGTVH RLDRPVSGLV VFARTSKALE RMNEIFRKRD VQKTYWAVVK NKPAEKKGKL VHWLTKNEAR NVTTAHDEEV PGSQRAELSY RWVGEINKFH LLEVMPVTGR PHQIRVQLAS MNCPIRGDVK YGYPKGNPDG SINLHARRLY FEHPVKKEPI ICRAGVPNDP FWEEFLTLDK EVIKPEHLDF LHE
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