| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_3744 |
|---|
| Symbol | |
|---|
| ID | 8227329 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 4560082 |
|---|
| End bp | 4561482 |
|---|
| Gene Length | 1401 bp |
|---|
| Protein Length | 466 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 644931575 |
|---|
| Product | beta-lactamase domain protein |
|---|
| Protein accession | YP_003088113 |
|---|
| Protein GI | 255037492 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1236] Predicted exonuclease of the beta-lactamase fold involved in RNA processing |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.000226651 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGATCC AATTCTTTGG CGCCGCACGC ACCGTTACCG GAAGCAAGCA CCTCATTACC
ACTGAAAAAG GAACAAAAGT ATTGCTCGAC TGCGGGCTTT TCCAGGGCAT TCAAACCGAC
GAATTCAACC AGGAATTCGG CTTCAAACCT GCTGATGTCG ACTATGTGAT CCTTTCACAC
GCGCACATCG ACCACTCGGG GCTGCTCCCG CGCCTGGTGC GCAAGGGCTT CAAAGGACCA
ATTTACTGCA CCGCCGCCAC TGCCGACCTT TGCCGCGTAA TGCTGCTCGA CAGCGCCCAT
ATCCAGGAAA AAGACCTTGA ACGCATCAAT AAGCGCCGCC AAAAACAGGG CCGCCCGCTG
CTGGAAGAGC TTTATAATGC CGAAGACGCC GCGCAGGCGT TGAGCCTTCT CAAAACCGTT
CGTTACGGGC AAACTTTCTT TTTGGGCGAA GAAAACGAAA TTTCCGTATT CCTGACCGAC
GCCGCGCATT TGCTGGGCAG CGCCGCCGTG CATTTGAGCA TTCCTGATGG CGGCACATTT
AAACAAGTGA CTTTTACTGG CGACATCGGC CGACCTGAGG ACCGCATTCT ACGCAAACCG
GAACCATTTC CGCAGGCCGA TTACATCATT TGCGAATCGA CTTACGGCGA CCGGCTGCAC
GAAAAAGAGA TTGATATGCA TGCGCATTTG CTGCGCATTG TGCAGGAAAC CTGTGTGCGC
CGCCGCGGTA AACTGATCAT CCCGGCCTTC GCAATCGACC GCACGCAGGA GCTCATTTAC
GCGCTCGACC AGCTCTCGAG CTCGGGCCAG CTTCCTCAAA TCCCGGTGTA CATCGACAGC
CCGCTGGCGA TCCGCGCGAC GGCGATCATG AAGGAACACG ACGAATGCTT CAATCCCGAA
ATCCTCGAAT ACATCGAGAA AGACGGCGAC GCGTTCGCAT TTCCGTACCT GAATTACATT
TCGGACGTGC AGGAATCCAT TGCGCTCAAC GATCGCAAGG AGCCCTGCAT CATCATTTCC
GCCTCGGGAA TGGCCGAAGC GGGGCGCATT AAGCATCATA TTAAAAACAA CATCGGCGAC
CCGGACTCGA CGATCCTGCT CGTCGGCTAT GCCTCTGCCA ACACGCTTGC GGGCGCATTG
AAGCGCGGCG ACAGGCAGGT AAACATTTTC GGGGAGCGCC TGGATGTGAA GTGCCGCGTC
GAAACGATGG ATTCCTTCTC CGGCCACGGC GATTACAGCG AAATGCTGGA TTTTCTTTCG
TGCCAAACGC CGGAGCGGGT GAAGGAAGTG TTCCTCGTCC ACGGCGAATA CGAAACGCAG
GTCGCATTCA AATTGAAGCT GGAAAAGGCC GGATTCCGCA AAATCCACAT TCCGGCGCTG
TATGAGGGTG TAAAAATTTA A
|
|---|
| Protein sequence | MLIQFFGAAR TVTGSKHLIT TEKGTKVLLD CGLFQGIQTD EFNQEFGFKP ADVDYVILSH
AHIDHSGLLP RLVRKGFKGP IYCTAATADL CRVMLLDSAH IQEKDLERIN KRRQKQGRPL
LEELYNAEDA AQALSLLKTV RYGQTFFLGE ENEISVFLTD AAHLLGSAAV HLSIPDGGTF
KQVTFTGDIG RPEDRILRKP EPFPQADYII CESTYGDRLH EKEIDMHAHL LRIVQETCVR
RRGKLIIPAF AIDRTQELIY ALDQLSSSGQ LPQIPVYIDS PLAIRATAIM KEHDECFNPE
ILEYIEKDGD AFAFPYLNYI SDVQESIALN DRKEPCIIIS ASGMAEAGRI KHHIKNNIGD
PDSTILLVGY ASANTLAGAL KRGDRQVNIF GERLDVKCRV ETMDSFSGHG DYSEMLDFLS
CQTPERVKEV FLVHGEYETQ VAFKLKLEKA GFRKIHIPAL YEGVKI
|
|---|
| |