| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_3715 |
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| Symbol | |
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| ID | 8227300 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | + |
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| Start bp | 4523115 |
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| End bp | 4525502 |
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| Gene Length | 2388 bp |
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| Protein Length | 795 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 644931547 |
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| Product | ribonuclease R |
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| Protein accession | YP_003088085 |
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| Protein GI | 255037464 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.713746 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGAGAAA AAAAGAGTAA AAAGAAACAA CAACCTGAAA AAAGGGAGGC CTCGGCGCCT
CATCACATTG TTTCTTACAT AGATAATTTA AAGGCGGACA TTGCCGCGTT CTTCGACCTG
AACGCCGAGC ATTCGTTCCG GCCATTCGAC GTACACGATC ATTTTGGAGT GCACGACAAA
AAAGTGCGAC TGCTCTTTAA CGAAATACTG CACGAACTGG AACAGGACGG CAGGCTGGTT
TACAATAAAA ACGGCACCTA TCACGCGGCA CCGCTTAAAA CAAAGCCGCA GGGCCTTACC
GGACGCGTGG AGCGTGTAAA TAAGGGCTTC GCATTTGTGG TGATCGAAGG CCGTGAGGAT
GATATTTATG TGGATCTGGA ATTGCTGAAC GGCGCCTGGG ACGGCGATAT CGTTCAGGTG
CAGCCGCTGT CGAAAAATTT GCGCTCGAAA GGGCGCGGCG ACTCGGGCCG GAACCGTACG
GAAGGACGCG TTACCGATAT TGTGGAGCGT TCGAACGCGG AAATCGTGGG GATTATTGAG
ATTAATCCGC GGTTTGCAGT CGTGCAGCCC GATAACAAGC GACTTTATGA TCCCATATAC
CTTGAACCTG ACCAAGTGGG CGCAGCCCGC CACGGCGACA AGGTGATCGT GAAAGTGACC
GAATGGTCCA CGCGCAGGAG CCAGGCCGAG GGGGAAATCG TTTCGGTGCT GGGCGCTGCG
GGTAACAACG ATGTCGAAAT GCACGCGATC CTCGCCGAAT TCGGGCTACC CTATCATTTC
CCTGACGAAG TAGAGGCCGA GGCTCAGAAA ATCCCGAACA AGATTGTCAA AAAGGACCTC
GCCAAACGCC GCGATATCCG CGACGTGCTC ACGTTCACGA TCGACCCGGT GGATGCCAAG
GACTTCGACG ACGCATTGTC TGTCCGTTAC CTGGACGAGG ACGTGGTGGA AGTGGGCGTG
CATATCGCCG ACGTGTCGCA TTATGTACTG CCGGGCACGG AGCTGGAAAA AGAGGCGCTG
CGCCGCGCGA CGTCGGTTTA CCTCGTCGAC AGGACCGTGC CGATGCTCCC TGAAAAGCTT
TCGAACAACC TTTGTTCGTT ACGCCCGAAT GAGGACAGGC TTGCATTTTC GGCCATTTTT
GAGATTACTT CAAAAGGTAA GTTGCTCAAA GAGTGGTTTG GCAGAACGGT GATCCATTCC
GACCGCCGTT TCACCTACGA AGAAGCGCAA GCCGTGCTGG ACTCCGGCGA GGGCGATTTT
CCGAAAGAAC TGGACACGCT GAACAAGCTT GCCAAAATTT TCAGAAAAGA GCGGTTCAAA
AAAGGCGCGA TCAACTTTGA GACGCCTGAG GTGCGTTTTC GTCTTGACCC GGAAGGCCGT
CCGTTGGGTA TTTACACCAA AGAGCGCCAC GATTCGAACA AGCTGATCGA GGAATTTATG
CTGCTCGCCA ACAAACGTGT GGCGGAATAT GTATACTCGC TTTCCAAAGG TGAGGACAAG
AATACGATGG TTTACCGCAT TCACGAAGCG CCCGACCCGG ATCGTCTGCA AACTTTCGCG
AATTTCGTGG CCAAACTGGG CTTGAAACTG GAAGTGGAAG AAGAAAGCAA GATTGCCAAA
TCCATGAATG CGATGCTCGC GAAAGTGGAA GGCAAGCCAG AGCAGAACCT CATCGAGTCC
CTCGCGGTGC GCACGATGGC CAAGGCGCGG TACAGTACCG AAGATCTCGG CCATTTCGGG
CTTGCATTCA GGCGGTATTC GCACTTCACG TCGCCCATCC GCCGGTACCC AGACGTGATG
GCGCACAGGC TGTTGCAGCA TTATCTGGAT GGCGGCGCCA ATGTGGACCA GGAAACTTAT
GAGCGGGCCT CGAAACATTC CTCGGAGCGC GAGCGCCTCG CCGCGGAAGC GGAAAGGGCG
TCGATCAAAT ACAAGCAGGT CGAATACATG AGCATGATGG ACCCCGAGAA GGAATTCGGC
GGCATCATCA CAGGCGTGAC GGAGTTCGGG ATATTCGTGG AAATCACGGA AACCGCTTCG
GAAGGGCTCA TCCGCATGAC CGACCTCGGC GACGATTATT ACGAACTCGA TAAGGAAAAC
TATCGCGTGA TCGGCCAGCA CACCAAGAAA ATATATGCTT TTGGTGACGC TGTGAAGGTA
AAAGTGAAGG AAACCAACCT GGCCCGCCGG AGTATGGACC TGTATTTGGC CGGGACGAAA
CCGGGCCGCA GAAGCGAGTT TAGCCGTCCC GACTTTGGAC GCGACCGCGA TCGCCGCCCG
CGCGAACGTA AGCCCAAGGA GCCGAGAGGT TCCGGGCGTG TGAAGCGTGG TGCTGGCGGA
ACTGGTGGGG GAAGTTCGGC TAAGGTGAAG CGGCGGAGAA GAAATTAA
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| Protein sequence | MREKKSKKKQ QPEKREASAP HHIVSYIDNL KADIAAFFDL NAEHSFRPFD VHDHFGVHDK
KVRLLFNEIL HELEQDGRLV YNKNGTYHAA PLKTKPQGLT GRVERVNKGF AFVVIEGRED
DIYVDLELLN GAWDGDIVQV QPLSKNLRSK GRGDSGRNRT EGRVTDIVER SNAEIVGIIE
INPRFAVVQP DNKRLYDPIY LEPDQVGAAR HGDKVIVKVT EWSTRRSQAE GEIVSVLGAA
GNNDVEMHAI LAEFGLPYHF PDEVEAEAQK IPNKIVKKDL AKRRDIRDVL TFTIDPVDAK
DFDDALSVRY LDEDVVEVGV HIADVSHYVL PGTELEKEAL RRATSVYLVD RTVPMLPEKL
SNNLCSLRPN EDRLAFSAIF EITSKGKLLK EWFGRTVIHS DRRFTYEEAQ AVLDSGEGDF
PKELDTLNKL AKIFRKERFK KGAINFETPE VRFRLDPEGR PLGIYTKERH DSNKLIEEFM
LLANKRVAEY VYSLSKGEDK NTMVYRIHEA PDPDRLQTFA NFVAKLGLKL EVEEESKIAK
SMNAMLAKVE GKPEQNLIES LAVRTMAKAR YSTEDLGHFG LAFRRYSHFT SPIRRYPDVM
AHRLLQHYLD GGANVDQETY ERASKHSSER ERLAAEAERA SIKYKQVEYM SMMDPEKEFG
GIITGVTEFG IFVEITETAS EGLIRMTDLG DDYYELDKEN YRVIGQHTKK IYAFGDAVKV
KVKETNLARR SMDLYLAGTK PGRRSEFSRP DFGRDRDRRP RERKPKEPRG SGRVKRGAGG
TGGGSSAKVK RRRRN
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