| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_3695 |
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| Symbol | |
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| ID | 8227280 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 4496612 |
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| End bp | 4499959 |
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| Gene Length | 3348 bp |
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| Protein Length | 1115 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 644931527 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_003088065 |
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| Protein GI | 255037444 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGAAGTTA AAGACTTATT AACACTATAC GGAGGCGACA GTTACCTGGA TGTGCTAAGC
GCGCAGATCG CCTCGAAGGA TGCCGAAGCG GCGCATGTGC AGATCAAGGG ATTGGTTGGA
AGCCTCGACG CAGTGATTGC GGCAGCGGTG CAGCACAGGA AAAAAACGCC GGCATTGTAC
ATTCTCAGCG ACCGCGAGGA AGCCGCCTAT TTTCAGAATG ATTTGCAGAA CCTGCTGGGC
GCGACGGAGG TGCTTTTTTA CCCCACGTCG TACAAGCGGC CTTATCATTA CGAGGAGGTG
GATAATGCCA ATGTGCTCAT GCGCGGCGAG ATTCTCAACA AACTCAGCGC AGGTCGCAGC
ACCCCGGTCC AGATCGTGAC CTACCCGGAG GCATTGTTTG AAAAAGTAAT CAACAAGCGC
TCGCTCCGGG CGAACACATT CTCTGTAAAA GTAGGTGAGA AGCTTGATCC CGCGTTCCTG
ACGGAGTTTT TGAACAGCTA TGGCTTCGAA ATCACCGATT TTGTATTCGA AGCCGGACAG
TTTTCCGTGC GCGGGGGGAT TTTGGACGTG TTTTCATTCG CCAACGAACA TCCGTTCCGT
ATCGAGCTCT TTGGCGATGA GGTGGAAAGC ATCCGCTCTT TCGACCCCGA CACGCAGCTT
TCGATTGAGA GCGTGAAGCA GATCAATATC GTCCCCGACA TTCAGCAAAA GCTCTCGCAC
GAAACGCGCG ACTCATTCCT GAGTTTCTTC ACCGACGACA CGGCGATCTG GTTCAAAGAC
GCCGAGCTGA CATTGGAGGT GATTGAAAAA TGTTTTGAAA GAGCTGAAAA AGCGCTGGAA
GAAGTAACCG GCGGCGGCGT GCAGATCGTT TCAAACCCGC AGGAGCTTTT CGAGACGCGG
CGCGGCTTTC TGAACCAGGT GAAGAAGTTC AAAACCGTGG AGTTTGGGAA GAAATCCTAT
TTCAAAACCG AATCCAAGCT GCCTTATTCT TCGAAACCGC AGCCTTCATT TAATAAAGAT
TTTAAACGAC TTTTGGACGA TTTATCTGAA AATCAGAACA AAGGCTATCT CAATATCATC
GTCGCCGAGC AGCCCAAGCA GCTCGACAGG CTGGAACGCA TCTTCGAAGA CCTGGACCCG
TTCGTGAAAT TCCGGCCGAT GCACATTTCG CTGCGGGAAG GTTTTGTGGA CGACAACCTG
AAAGTGGCGT GCTACACCGA TCACCAGATT TTCGCGCGTT TTCACAAATA CCGGTTGAAA
GAAAAATTCA GCAAATCCAA GGCGATGACC TTGAAAGAGC TGAAATCGTT GCAGGTAGGA
GATTTTGTGA CGCACGTCGA TTACGGCATT GGCCGCTTTG GGGGCATGGA GCGCAAGGAT
GTGAACGGGA AGGAGCAGGA GGCGGTACGA CTGATTTACC GCGACAATGA TTTGCTGTAC
GTAAGCGTGC ATAACCTCCA CAAAATCGCC AAATACACCG GCAAGGAAGG CACGCCGCCC
GCTATGAGCA AGCTTGGTTC GGGGGAATGG GAAGCTAAAA AGTCGAAGGT TAAGAAGCAG
CTGAAAGACA TTGCCCATGA GCTGATCGCA TTGTACGCCA AACGCCGCCA GGCACCGGGT
TTTCCGTTTT CAAAAGACAA TTACCTGCAA GTGGAGCTCG AATCGTCGTT TATATATGAA
GACACGCCCG ACCAGGCGAC GGCTACGGCC AATGTGAAGG ACGATATGGA GAAAGGCCAC
CCGATGGACC GGCTCGTGTG CGGGGATGTG GGTTTTGGTA AAACCGAAAT CGCGATCCGT
GCCGCATTTA AGGCCGTGTG TGACAGTAAG CAGGTGGCGG TACTCGTGCC GACGACCATC
CTGGCCATGC AGCATTATAA AACATTCAGC GAGCGCCTTG CCGATTTTCC GGCCCGCGTG
GGTTATATCA ACCGTTTCAA GTCGGCGAAG GAGATCAAGC AGACTTTGAA AGAAGCCGAG
GAGGGCAAGA TCGACATTCT CATCGGTACC CACCGCATTT TGAATAAAGA TGTGAAATTC
AAGGATCTGG GTCTGCTGGT TGTCGACGAA GAGCAGAAGT TTGGGGTAAA AGCCAAAGAC
CGGCTGAAAG AAATGCGAGT GAATGTGGAC GTACTGACAT TGACGGCCAC GCCAATCCCG
CGCACGCTGC ATTTCTCACT CATGGGCGCG CGCGACCTTT CGGTAATCGC TACGCCACCG
CCGAACCGGC AGCCGGTTAC TACGGAAGTT CATACATTCA GCGAGGAATT TATCCGCGAC
GCGATCAGCT TCGAAGTGCA GCGCGGCGGA CAGGTTTTCT TTGTCCATAA CCGTGTAAAC
GACATCGAAT CCATCGCCAA TATCATCCTG CGCCTCGTGC CCGACGTGCG CATAGGCGTG
GCGCACGGGC AAATGGAAGG CGATAAGCTG GAAAAAGTGA TGATGAACTT CATCGAAGGT
GAATACGACA TCCTCGTTTC GACGAATATC ATCGAATCGG GTATCGATAT TGCCAATGCA
AATACGATTA TCATTAATTC CGCGCATATG TTCGGTCTTT CGGACCTGCA CCAGATGCGC
GGCCGCGTGG GGCGCTCGAA TAGGAAGGCA TTTTGCTACC TGCTCACGCC GTCGGCTTCG
ACGCTGGCGA GCGATTCGCG CAAACGTTTA CAGACATTGG AAGAGTTTTC CGACCTCGGG
GACGGTTTCA AGGTAGCGAT GCGCGACCTC GACATTCGCG GCGCGGGTAA CCTGCTGGGC
GCCGAGCAGA GTGGTTTTGT GAACGATTTG GGATATGAAT TATACCACAA AATGCTCGAT
GAGGCCGTTC ATGAGCTGAA AAGCAATGAA TTCAAAGACC TGTTCGAAGG CGTTTTTAGC
CTGCCGAAAA ACCTGGTGCC GGACACGCAG ATCGAGACGG ATTTCGCGAC GCTGATTCCG
GATGATTATG TTAAAAATAT TTCGGAAAGG CTGTCGTTAT ATACCCGCCT CGACAATATT
GGGACGGAAG AGGAACTCGG TAAATTCGAA CAGGAAGTAC TCGACCGTTT CGGCCCGATT
CCGCATGAAG TGCAGGACTT GCTCAAAACG GTCCGTTTGC GCTGGGAAGC AGAGGCTTTG
CAGTTTGAAA AACTGACTTT GAAAAGCAAT ACGATGAAAG GCTACTTCGT TACTTCGCAG
AATGACGAAT TCTTTCAATC GGCGAAGTTC GGACAGGTGA TCGATTACAT TAAAAAACAC
CCGAAACAAA TTTCGCTTAA AGATCAGAAA GGCAAGCTGA TATTGATTTG CGAGGACATT
AAAAGCATTG ATCAGGCGCG CCAGGTGTTA ATGGAAATGA CACAGTAA
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| Protein sequence | MEVKDLLTLY GGDSYLDVLS AQIASKDAEA AHVQIKGLVG SLDAVIAAAV QHRKKTPALY
ILSDREEAAY FQNDLQNLLG ATEVLFYPTS YKRPYHYEEV DNANVLMRGE ILNKLSAGRS
TPVQIVTYPE ALFEKVINKR SLRANTFSVK VGEKLDPAFL TEFLNSYGFE ITDFVFEAGQ
FSVRGGILDV FSFANEHPFR IELFGDEVES IRSFDPDTQL SIESVKQINI VPDIQQKLSH
ETRDSFLSFF TDDTAIWFKD AELTLEVIEK CFERAEKALE EVTGGGVQIV SNPQELFETR
RGFLNQVKKF KTVEFGKKSY FKTESKLPYS SKPQPSFNKD FKRLLDDLSE NQNKGYLNII
VAEQPKQLDR LERIFEDLDP FVKFRPMHIS LREGFVDDNL KVACYTDHQI FARFHKYRLK
EKFSKSKAMT LKELKSLQVG DFVTHVDYGI GRFGGMERKD VNGKEQEAVR LIYRDNDLLY
VSVHNLHKIA KYTGKEGTPP AMSKLGSGEW EAKKSKVKKQ LKDIAHELIA LYAKRRQAPG
FPFSKDNYLQ VELESSFIYE DTPDQATATA NVKDDMEKGH PMDRLVCGDV GFGKTEIAIR
AAFKAVCDSK QVAVLVPTTI LAMQHYKTFS ERLADFPARV GYINRFKSAK EIKQTLKEAE
EGKIDILIGT HRILNKDVKF KDLGLLVVDE EQKFGVKAKD RLKEMRVNVD VLTLTATPIP
RTLHFSLMGA RDLSVIATPP PNRQPVTTEV HTFSEEFIRD AISFEVQRGG QVFFVHNRVN
DIESIANIIL RLVPDVRIGV AHGQMEGDKL EKVMMNFIEG EYDILVSTNI IESGIDIANA
NTIIINSAHM FGLSDLHQMR GRVGRSNRKA FCYLLTPSAS TLASDSRKRL QTLEEFSDLG
DGFKVAMRDL DIRGAGNLLG AEQSGFVNDL GYELYHKMLD EAVHELKSNE FKDLFEGVFS
LPKNLVPDTQ IETDFATLIP DDYVKNISER LSLYTRLDNI GTEEELGKFE QEVLDRFGPI
PHEVQDLLKT VRLRWEAEAL QFEKLTLKSN TMKGYFVTSQ NDEFFQSAKF GQVIDYIKKH
PKQISLKDQK GKLILICEDI KSIDQARQVL MEMTQ
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