Gene Dfer_3627 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_3627 
Symbol 
ID8227212 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand+ 
Start bp4422042 
End bp4422704 
Gene Length663 bp 
Protein Length220 aa 
Translation table11 
GC content53% 
IMG OID644931459 
Productendonuclease III 
Protein accessionYP_003087997 
Protein GI255037376 
COG category[L] Replication, recombination and repair 
COG ID[COG0177] Predicted EndoIII-related endonuclease 
TIGRFAM ID[TIGR01083] endonuclease III 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value0.620738 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.69522 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTTAAAA AAGAACGCTA TAAACATTTC CTGGACTATT TCACGCAGAA CTTCCCCGAA 
CCGGAAACCG AACTGCACTA TTCCAGCCCG TACGAGCTGC TGGTGGCGGT AATCCTGTCG 
GCACAATGCA CCGATAAGCG GGTGAATATG GTTACCCCGA AGCTATTTGA ACGTTTCCCG 
GACCCCGAGT CGCTTGCTGC TTCCAATACG GAGGAGGTAT TTACATACAT CCGCTCGATT 
TCCTATCCCA ACAACAAGGC CAAGCACCTG GTCGGCATGG CCCGCATGCT GGTTGAACAG 
TTCCATTCGG AAGTTCCTTC CACCGTGGAG GACTTGCAAA AGATGCCCGG AGTGGGACGC 
AAAACGGCCA ACGTGATCGC CTCGGTGATA TTCAGCATGC CCGCGATGGC GGTGGACACA 
CACGTTTTCA GGGTGTCGCG GAGGCTTGGA CTGGTGCCTA TGACCGCCAA AACGCCCCTG 
GCCGTGGAAC GCGAACTCGT GACGCATATT CCGAAGCATT TGATTCATAA AGCGCATCAC 
TGGCTCATCC TGCACGGGCG CTACGTATGT ACGGCGCGCA ATCCGCAATG CTTCCAGTGC 
CCGCTGTCGC CATTTTGCAG ATACTTTGAA AAAAATGTAA AAATCGACGT TTTTCATTCG 
TGA
 
Protein sequence
MLKKERYKHF LDYFTQNFPE PETELHYSSP YELLVAVILS AQCTDKRVNM VTPKLFERFP 
DPESLAASNT EEVFTYIRSI SYPNNKAKHL VGMARMLVEQ FHSEVPSTVE DLQKMPGVGR 
KTANVIASVI FSMPAMAVDT HVFRVSRRLG LVPMTAKTPL AVERELVTHI PKHLIHKAHH 
WLILHGRYVC TARNPQCFQC PLSPFCRYFE KNVKIDVFHS