| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_3596 |
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| Symbol | |
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| ID | 8227181 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | + |
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| Start bp | 4389466 |
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| End bp | 4392456 |
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| Gene Length | 2991 bp |
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| Protein Length | 996 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 644931430 |
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| Product | bifunctional preprotein translocase subunit SecD/SecF |
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| Protein accession | YP_003087968 |
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| Protein GI | 255037347 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.318172 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCAACA AGAACGGGAT AATCGCGTTG ACGATCGTCG TCGCCCTTAT TAGCGTCTAT
TATCTGTCCT TCACTTTTGT GTCGCGCAAT ATCAAAAGCA AGGCCGTAGC CTATGCGACC
GATGCGAAAG GCGAGGTGGA TATGACCAAA AAACAGCATT ATATCGACTC CCTGTGGCGT
GAAGACGTGT ACCTCGGCCA CACTTTGCAG GAAGTAATGG AGCGCGAACT GAACCTCGGC
CTCGACCTTC AGGGCGGTAT GCACGTAGTT TTGGAAGTTG CTCCTGCGGA CATCCTGAAA
GGCATGGCTG GCGGTAACGC TCGCAGCGCG GCATTCCAGA GCGCATTGAA AAAAGCAGGT
GAAGATAAAT CGGCCAACAA CAGCACATTT ATCAACCGCT TCGTAAGCGC TTATAAAGAA
GCTGCTCCCA ACACAAGCCT CGCTTCCGTG TTCGCTACCA GCGCCAACCG CGGCAAGATC
AACAGCAACT CGTCGGATTC GGACGTGATT AAAATGCTGA AAACGGAGAT CGACGGTTCT
ATCGACCGCG CGTTCCAGAT CACCCAGGCC CGTATCGACA AATTCGGTGT GACTAACCCG
AACATCCAGC GCCTGCCGGG TCAGAACCGC GTTTTGGTAG AGCTTCCGGG TGTGGATAAC
CCCGAGCGTG TTCGCCGCCT CCTTTCCGGT GCCGCGAAAC TGGAATTTGC AGAAGTATAC
CTGACGCAGG AACTTGGCGC AGGTCTGGAA GGCCTTGGCC GTTACCTGAC TCAGCAAGCT
GAAATTGAGA AAGCCGCTAA AAAATCTGCT CCGGCGACTG CATCTGCAGA CACCGCTGCC
AGCGACACTA CCAAAAAATC AACTGCTGGC GGCCTCGCTG CCCAGTTGGA GCAAAAATCG
GATACTGCCG CTACTGACTC GGCTGCATTG GCAGCTCAAA GTGCTGCATT GACCAGCCTT
TTTGTGCCTA TGCCACAAGG CCTTGGCGTG TACCTGAAAG ACACTGCGCG CGCCAGCGAA
ATCCTGCGCC GCCCCGAAGT TCGCTCGCTT TTCCCTGCCG ACCTCGTGTT TATGTGGGAC
CGCAAAGGCA CCGAAGCAGG TGGTAACCAG TTGATTCTGC CTTTGTATTT CATCAAGAAA
ACCAATGGTG AAGCAGCCAT GGAAGGCGAC GTGATCGTGG ATGCAACGCA CGACTACGAC
GACCGCGGCC GTCCGGAAGT AACCATGCGT ATGAACGGCG AAGGTGCCCG CAAATGGCGT
TCACTCACTG CCCGCAGCGT TGGCCGCCCG GTAGCGATCA TCATCGATAA CCTTGTTTAC
ACCGCTCCAA CCGTACAGGG CGAGATCCCG AACGGTAACT CTTCGATCAC CGGTAGCTTC
ACCGTGGAAG AGACAAAAGA TATGGCTAAC GTACTGAAAG CCGGCAAACT GCCTGCTCCA
ACCCACATTG TGGAAGAAGC TGTGGTAGGT TCTTCACTCG GTGCTGAGGC GATCAACGAC
GGATTGATGT CGTCGGCAGT AGGTTTGCTG ATCGTACTTG TGTTCATGGT GGCTTATTAC
AACCAGGCTG GCTGGATCGC TGACATTGCA CTTTTGATCA ACTTGTTCTT CCTGCTGGGT
GTGATGGCGT CCCTTGGAGC TGTATTGACG CTCTCGGGTA TCGCGGGTAT CGTGCTTTCG
ATCGGTATGG CGGTGGATGC GAACGTACTG ATTTACGAAG GTATCAAGGC CGAGCTGGCG
GAAGGAAAGC CGTTTGCACA ATCGATCCGT GACGGTTTCA AGCATTCATT GACCGCCATT
ATCGACTCCA ACGTTACTAC ACTTTTGACC GGTATCATCC TTTACACATT CGGTACAGGT
CTGGTATTGG GTTTTGCAAC TACCCTTGTG CTGGGTCTTT TGACCTCATT GTTCAGTGCG
ATCTTCATCA CGCGTTTGCT GCTTGAACAA AAGCTCAAAA ACGGCAAGAC CTTCGCATTC
GCTACGAACC TGACCAAAAA CTGGTTCAAG GACAACGACT TCGACTTCGT TTCGCAGCGC
CGTCGCTTCT ACGTGATCTC CGGTATCATC ATCGCGATCG GTGTGGGTTC GTTCATCTTC
AAAGGGTTCG GATTGGGTAT CGACTTCAAA GGCGGCCGCT CTTATGTAGT TCGCTTTGAA
AACAATGTGG ATGCAGATGC GCTTCGTGCC AACATGGACG ACGTACTCGG CTCTACTACC
GAGGTAAAAA CTTTCGGAGG CCAGGATCAG GTGAAAATCA CGACTCCTTA CCTCATCGAA
GACACCACGC CTGAGGCTGA CCAGAAAGCG GAAGCGAAAA TCCTGGAAGC AACCCAAAAA
ATCGCCAATA ACCCTGCTAA GATCGTAAGC TCGAACAAAG TAGGTCCTAC CATGGCGAAA
GACACGTTGT GGAGCGCGGT TTACGCGGTA TTGCTCGCAT TGGCCGCCAA CTTCGTGTAT
ATCCTCATCC GTTTCAAACG CGTGGCGTTC TCTTACGGTG CGGTAATGTC ACTCGCGCAC
GACGTGGTGA TCATCCTGGC GATCTTCTCA TTGTTCAACG GCTGGTTGCC ATGGTCACTC
GATATCGACC AGGCATTCAT CGGCGCGATT TTGACCATGA TCGGTTATTC GATGAACGAC
ACCGTCGTAA TTTATGACCG TATCCGTGAT TACCTGGCCG ACGAGAAATC CCGCGGACAA
AGCCTTTCTA CCGTTATCAA CAACGCGTTG AACAGTACTT TGAGCCGTAC GGCTGTAACG
GGTATCTCGG TAATCCTCGT GTTGATCGTC CTGATGATCT TCGGTGGAGC TGTAATCCGC
GGATTTACTT TCTGTATGTT GCTTGGGGTA ATCGTGGGTA CTTATTCTTC ACTCTTCGTG
GCGGCGCCGA TCGTGGTAGA CCTGCTGCAA CGTTCGCAGA AGAATGAGCC GGCACCAGCA
GTAGCAGCAG ACGCTACGGC GCCAGCGGCG ACGAAAAAAG TCAAGGCTTA A
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| Protein sequence | MTNKNGIIAL TIVVALISVY YLSFTFVSRN IKSKAVAYAT DAKGEVDMTK KQHYIDSLWR
EDVYLGHTLQ EVMERELNLG LDLQGGMHVV LEVAPADILK GMAGGNARSA AFQSALKKAG
EDKSANNSTF INRFVSAYKE AAPNTSLASV FATSANRGKI NSNSSDSDVI KMLKTEIDGS
IDRAFQITQA RIDKFGVTNP NIQRLPGQNR VLVELPGVDN PERVRRLLSG AAKLEFAEVY
LTQELGAGLE GLGRYLTQQA EIEKAAKKSA PATASADTAA SDTTKKSTAG GLAAQLEQKS
DTAATDSAAL AAQSAALTSL FVPMPQGLGV YLKDTARASE ILRRPEVRSL FPADLVFMWD
RKGTEAGGNQ LILPLYFIKK TNGEAAMEGD VIVDATHDYD DRGRPEVTMR MNGEGARKWR
SLTARSVGRP VAIIIDNLVY TAPTVQGEIP NGNSSITGSF TVEETKDMAN VLKAGKLPAP
THIVEEAVVG SSLGAEAIND GLMSSAVGLL IVLVFMVAYY NQAGWIADIA LLINLFFLLG
VMASLGAVLT LSGIAGIVLS IGMAVDANVL IYEGIKAELA EGKPFAQSIR DGFKHSLTAI
IDSNVTTLLT GIILYTFGTG LVLGFATTLV LGLLTSLFSA IFITRLLLEQ KLKNGKTFAF
ATNLTKNWFK DNDFDFVSQR RRFYVISGII IAIGVGSFIF KGFGLGIDFK GGRSYVVRFE
NNVDADALRA NMDDVLGSTT EVKTFGGQDQ VKITTPYLIE DTTPEADQKA EAKILEATQK
IANNPAKIVS SNKVGPTMAK DTLWSAVYAV LLALAANFVY ILIRFKRVAF SYGAVMSLAH
DVVIILAIFS LFNGWLPWSL DIDQAFIGAI LTMIGYSMND TVVIYDRIRD YLADEKSRGQ
SLSTVINNAL NSTLSRTAVT GISVILVLIV LMIFGGAVIR GFTFCMLLGV IVGTYSSLFV
AAPIVVDLLQ RSQKNEPAPA VAADATAPAA TKKVKA
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