| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_3535 |
|---|
| Symbol | |
|---|
| ID | 8227120 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 4317128 |
|---|
| End bp | 4317958 |
|---|
| Gene Length | 831 bp |
|---|
| Protein Length | 276 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 644931370 |
|---|
| Product | periplasmic binding protein |
|---|
| Protein accession | YP_003087908 |
|---|
| Protein GI | 255037287 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4558] ABC-type hemin transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.862472 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGTCGG TTTCGAGGTT ATTGATTGGC TTGATAATCC TGCTCTTCGC GGCGGGACAC
GGTAATGCGC GGGCGCTCCG CATCGTATCG GCAAATGGAA CGCTAAGCGA AATCCTGGTG
GGACTTGGCC TGGAAAAACA GATCGTGGGC GTGGATGTGA CCAGTACTTA CCCCGCTTCC
CTCGAAAAGC TCCCGAAAAT CGGGCATAAC CGCACCATTG CGGCCGAAGG CATCCTGGCG
CTGAACCCGG ATGTGATTAT TTATACCAAT CAGAGCATGC TATCCCCTGC CGTGGTGAAG
CAGCTCAGCG GCAGCGGCAA AAAACTGGTC GAGTTCAAGC ATGATTATTC CAAAGAGGGC
GCCATCAGGC TCATTCGCGA GGTAGGCACT TATTTCAATG CCAATGCGCA AGCCGAAAAG
ATGGTAAAAG CATTGCAGGC CGATCTGGCG AAAATTCCTG CTCCGGCAAA TCCTAAAAAA
TTGCTCTTCA TCTACGCCCG GGGCACGGGC ACATTAATGG TTTCGGGCAC AGGCACTTCG
CTCGACAAAA TGTTTGCATT GGCAGGACAT AAGAATGCTG TGGGCGGCTT CACAGATTTT
AAACCGCTCA CTGCCGAATC GCTCATCGCC GCCAATCCCG ACGTACTCGT GCTGTTTTCC
AGCGGACTGG AAAGCCTCGA AGGCATGGAC GGCCTGCTGA AAGTGCCTGG CGTAGCCAAC
ACCAGTGCGG GCAAAAACCG CCGGATCGTG ACCATGGACG GCCAGTTCCT CACCGGCTTC
GGGCCGCGGC TCGGCAAGGC AGCCGCCGAA CTTTCCCAAA AAGTAAAATA G
|
|---|
| Protein sequence | MQSVSRLLIG LIILLFAAGH GNARALRIVS ANGTLSEILV GLGLEKQIVG VDVTSTYPAS
LEKLPKIGHN RTIAAEGILA LNPDVIIYTN QSMLSPAVVK QLSGSGKKLV EFKHDYSKEG
AIRLIREVGT YFNANAQAEK MVKALQADLA KIPAPANPKK LLFIYARGTG TLMVSGTGTS
LDKMFALAGH KNAVGGFTDF KPLTAESLIA ANPDVLVLFS SGLESLEGMD GLLKVPGVAN
TSAGKNRRIV TMDGQFLTGF GPRLGKAAAE LSQKVK
|
|---|
| |