| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_3530 |
|---|
| Symbol | |
|---|
| ID | 8227115 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 4311662 |
|---|
| End bp | 4312738 |
|---|
| Gene Length | 1077 bp |
|---|
| Protein Length | 358 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 644931365 |
|---|
| Product | NAD-dependent epimerase/dehydratase |
|---|
| Protein accession | YP_003087903 |
|---|
| Protein GI | 255037282 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.229301 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACATAG CTTTGGTCAC CGGCTCGGCC GGACTCATTG GAAGTGAATC GGTTGCTTTT
TTGGCTGATA AGTTTGATCT GGTCATCGGA GTCGATAACA ACCTTCGTCA ATACTTCTTC
GGGGCCGACG GAAATACCGA ATGGAACCGC AACCGCATCG AAGAGGCATT CGGCAACTAC
AAACACTATT CGGCCGATAT CCGCGAGGTT AGCCAGCTCG AACCGATTTT CAAAGAGTAC
GGCACAGACA TTAAGATGAT CGTGCACGCA GCAGCGCAGC CAAGCCACGA CTGGGCAGCC
CGTGAACCGT TCACCGATTT CGGTGTGAAT GCGGTAGGGA CATTGAATAT GCTCGAAATG
ACCCGCCTGC ACGCTCCCGA GGCCGTTTTT ATCTTCACTT CTACCAACAA GGTTTACGGC
GACAATCCCA ACTACCTGCC ATTGGTAGAG CTCGAAACCC GCTGGGAAAT CGACGAAAGC
CATGCTTACT TCGAAAACGG TATCGACGAA AACCACAGCA TCGACCATAC GAAACACTCG
ATTTTCGGCG CTTCCAAAGT CGCTGCCGAC ATTATGGTGC AGGAATACGG CCGCTATTTC
GGTATGAAAA CGGCTGTTTT CCGCGGAGGA TGCCTCACAG GCCCGAACCA CTCCGGCGCG
CAGCTCCACG GCTTCCTGGC TTACCTCATG AAATGTGCCA TTACCGGAAC GCACTACACG
ATTTTCGGTT ACAAGGGCAA GCAGGTCCGC GATAATATCC ACAGCCACGA CCTGGTGAAC
ATGTTCTGGC ATTATTACCA AAATCCCCGT CCGGGCGAAG TTTACAACGC CGGCGGCGGC
CGTTTTGCCA ACTGCTCGAT GCTCGAAGCG ATCGCATTGT GCGAGCAGAT CACAGGAAAC
AAACTTTCTT ACTCATACTC GGAAACCAAC CGCATCGGCG ACCACATCTG GTACGTAAGC
GACCTTTCTA AATTCAAGTC GCATTACCCG GACTGGAACT GGGAGTACGG CCTCACGGAA
ACGCTCACGC AGATCCACGA CGGAATCGCT TCCCGACTAG GTGTAAAAAC GGTTTAA
|
|---|
| Protein sequence | MNIALVTGSA GLIGSESVAF LADKFDLVIG VDNNLRQYFF GADGNTEWNR NRIEEAFGNY
KHYSADIREV SQLEPIFKEY GTDIKMIVHA AAQPSHDWAA REPFTDFGVN AVGTLNMLEM
TRLHAPEAVF IFTSTNKVYG DNPNYLPLVE LETRWEIDES HAYFENGIDE NHSIDHTKHS
IFGASKVAAD IMVQEYGRYF GMKTAVFRGG CLTGPNHSGA QLHGFLAYLM KCAITGTHYT
IFGYKGKQVR DNIHSHDLVN MFWHYYQNPR PGEVYNAGGG RFANCSMLEA IALCEQITGN
KLSYSYSETN RIGDHIWYVS DLSKFKSHYP DWNWEYGLTE TLTQIHDGIA SRLGVKTV
|
|---|
| |