| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_3520 |
|---|
| Symbol | murE |
|---|
| ID | 8227105 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 4299061 |
|---|
| End bp | 4300536 |
|---|
| Gene Length | 1476 bp |
|---|
| Protein Length | 491 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 644931355 |
|---|
| Product | UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase |
|---|
| Protein accession | YP_003087893 |
|---|
| Protein GI | 255037272 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0769] UDP-N-acetylmuramyl tripeptide synthase |
|---|
| TIGRFAM ID | [TIGR01085] UDP-N-acetylmuramyl-tripeptide synthetase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.130908 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAACA ATCCAATTTT GAGCAGCCTG CTCGGCGAAG TGAAAGGGGC CATTATTCAT
GGCTATGCCG ATGTCACGGT CAAGAATATT ATCCTGGATT CCAGAAAAGT ACTGCCCGGA
AGCCTGTTTG TAGCATTGCG CGGCACGCAG GTAGACGGCC ACCAGTTTAT TACCACCGCT
GCCGACCTCG GCGCAGTGGC AATCCTTTGT GAAGAACTGC CCGAGCATGT CAGAGAAGAC
ATTACCTATA TCCAGGTGGA GGACTCGGCT GCGGCCATGG GGCATATTGC CGCCGCATTC
TACGGGCATC CTTCCAAAAA AGTGAAGCTG GTGGGCGTAA CGGGCACAAA TGGTAAAACC
TCGGTGGCGA CCTTCCTGTT TCAGCTTTTC AGGGCGCTGG GCTACCGTTC CGGCCTGCTC
TCGACGGTGC AGAACCAGAT CGAAGACGAA GTGATCCCTT CCACGCACAC CACGCCAGAT
GCTGTTGCAT TGAATGCATT GCTGGCGCAA ATGGCCGCGC GGAATTGCAG TCATGTATTT
ATGGAAGTAA GCTCGCATTC CGTGGCGCAG CACCGCATTA CAGGTTTGCA TTTCGCAGGG
GGCATTTTTA CCAACATCAC CCACGACCAC CTCGATTTTC ACAAGACATT CGATAATTAT
ATCAAAGCAA AAAAGGGCTT TTTCGACGCG TTGCCGAAAT CGGCCTTCGC ATTGGTGAAC
ATCGACGACC GCCGCGGCAC CGTGATGGTC CAGAACACCA AAGCGCGCGT GGAAACCTAT
TCGCTGCAAA CGCTTGCCAC TTTCAAGGGA AAAATCATTT CCGACACGCT CGCAGGCATG
CATATGGACA TTAACAGCCA GGAAGTATGG TTCCGCGTGA TCGGCCGGTT CAATGCCTAC
AATCTCCTGG CAGTATACGG CGCGGCGGTG CTTCTGGGCG AAAAGGAAGA GGCCGTCTTG
ACCGAATTAT CCAACCTGAA AAGCCCTCCC GGACGCTTTG AACAATTCCA TTCGGCAGAT
CTGATCGTGG GTATCGTGGA TTACGCCCAC ACGCCCGACG CCCTCGAAAA CGTGCTCGAA
ACGATCACAC ATTTGCGCAA CGGCAACGAG CAGGTGGTGA CGGTGGTAGG CTGCGGCGGC
AACCGCGACG CTGAAAAGCG CCCGAAGATG GCCGAAATCG CCTGCCGGTA CAGCAATCGT
GTGATATTGA CGTCGGATAA TCCGCGTTTC GAGGACCCGA TGGACATTCT CGACCAGATG
CGCAAAGGCG TGCCGCCATT GGATTACAAA AAAACCACCG TGATCGAAGA CCGCCACGAG
GCCATTCTTA AAGCCGGACT GGAAGCGCAG CCGGGCGACA TTATCCTCAT CGCGGGCAAG
GGACACGAAA ATTACCAGGA TGTAAAAGGC GTAAAACACC ATTTCGACGA CAAGGAAGTG
CTTATGGAAG TGTTCGCAAA ACGGGCGGGC AATTAA
|
|---|
| Protein sequence | MENNPILSSL LGEVKGAIIH GYADVTVKNI ILDSRKVLPG SLFVALRGTQ VDGHQFITTA
ADLGAVAILC EELPEHVRED ITYIQVEDSA AAMGHIAAAF YGHPSKKVKL VGVTGTNGKT
SVATFLFQLF RALGYRSGLL STVQNQIEDE VIPSTHTTPD AVALNALLAQ MAARNCSHVF
MEVSSHSVAQ HRITGLHFAG GIFTNITHDH LDFHKTFDNY IKAKKGFFDA LPKSAFALVN
IDDRRGTVMV QNTKARVETY SLQTLATFKG KIISDTLAGM HMDINSQEVW FRVIGRFNAY
NLLAVYGAAV LLGEKEEAVL TELSNLKSPP GRFEQFHSAD LIVGIVDYAH TPDALENVLE
TITHLRNGNE QVVTVVGCGG NRDAEKRPKM AEIACRYSNR VILTSDNPRF EDPMDILDQM
RKGVPPLDYK KTTVIEDRHE AILKAGLEAQ PGDIILIAGK GHENYQDVKG VKHHFDDKEV
LMEVFAKRAG N
|
|---|
| |