Gene Dfer_3509 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_3509 
Symbol 
ID8227094 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp4284655 
End bp4285635 
Gene Length981 bp 
Protein Length326 aa 
Translation table11 
GC content52% 
IMG OID644931345 
ProductTransketolase central region 
Protein accessionYP_003087883 
Protein GI255037262 
COG category[C] Energy production and conversion 
COG ID[COG0022] Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones43 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGAAA TAGCATTTAG AGATGCCATT CGCGACGCTA TGTCGGAAGA GATGCGCCTT 
GACAAGAGTA TTTTTTTGAT GGGTGAAGAG GTTGCGGAAT ACAACGGTGC TTATAAGGCG
AGTCAGGGAA TGCTCGATGA GTTCGGTCCC GACCGCGTGA TCGATACGCC TATCGCGGAG
CTTGGCTTTG CGGGGATTGC GGTGGGCGCT GCCGGAAACG GCCTCCGTCC GATCGTCGAG
TTTATGACAT TCAACTTCTC GCTGGTGGCG ATTGACCAGA TCATCAACAG CGCGGCTAAG
ATTCTTTCGA TGTCAGGCGG CCAGTACGGT TGCCCGATCG TGTTCCGCGG CCCGACCGGT
AATGCAGGTC AGCTTGGTGC ACAGCACTCG CAGAACTTCG AAAACTGGTT TGCCAACACG
CCCGGTCTGA AAGTGGTTGT TCCTTCGAAC CCTTACGACG CAAAAGGTTT GTTGAAATCG
TCCATTCGCG ATAACAACCC GGTGATCTTC ATGGAATCGG AGCTGATGTA CGGCGATAAA
ATGGCTGTTC CCGAGGAAGA ATACCTGATT CCGCTAGGTA AGGCCGATAT CAAACGTCAG
GGTAAAGATG TTACCATCGT TTCTTTCGGT AAAATGATCC CCCGCGTGGT AATGCCTGCG
GTGCTTCAAC TGGAAAAAGA AGGTATTGAC GTGGAAGTGA TAGACCTGCG CACCGTTCGT
CCGATCGATT ATCCTGCGGT GATTGAATCA GTTAAGAAAA CCAACCGCTG CGTGGTGGTG
GAGGAAGCGT GGCCTCTGGC TTCGATCTCT TCGGAAATCG CTTACCACAT CCAGCGCAAT
GCATTTGATT ATATGGACGC GCCGGTGATC CGTGTAACGA GCCGCGACGT GCCTTTGCCA
TACGCGCCAA CGCTGATCGA AGAGATCCTG CCTAACGTGA AGCGCACCAT AGACGCCGTG
AAATCGGTGC TTTACAAGTA A
 
Protein sequence
MKEIAFRDAI RDAMSEEMRL DKSIFLMGEE VAEYNGAYKA SQGMLDEFGP DRVIDTPIAE 
LGFAGIAVGA AGNGLRPIVE FMTFNFSLVA IDQIINSAAK ILSMSGGQYG CPIVFRGPTG
NAGQLGAQHS QNFENWFANT PGLKVVVPSN PYDAKGLLKS SIRDNNPVIF MESELMYGDK
MAVPEEEYLI PLGKADIKRQ GKDVTIVSFG KMIPRVVMPA VLQLEKEGID VEVIDLRTVR
PIDYPAVIES VKKTNRCVVV EEAWPLASIS SEIAYHIQRN AFDYMDAPVI RVTSRDVPLP
YAPTLIEEIL PNVKRTIDAV KSVLYK