| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_3470 |
|---|
| Symbol | |
|---|
| ID | 8227054 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 4245545 |
|---|
| End bp | 4247428 |
|---|
| Gene Length | 1884 bp |
|---|
| Protein Length | 627 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644931306 |
|---|
| Product | Cytochrome-c oxidase |
|---|
| Protein accession | YP_003087845 |
|---|
| Protein GI | 255037224 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0843] Heme/copper-type cytochrome/quinol oxidases, subunit 1 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.127917 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGCTA TTGAAGGATT GGAAACAGCT CACCACCACG CAGACGAGCA TGACCACCAC
CATGAAGCAC AAAGCTTTTG GCAGAAATAT GTATTTTGTG AAGACCACAA AGTAATTGCC
AAGCAGTATC TGATCACGGG TATTTTGTGG GCTGTTATCG GTATTACCAT GTCGGTAATC
TTCCGTATCC AGCTCGGTTT GCCCGATTCT AACCTGTCCT GGTTGAAGCC TGTCCTTGGT
GGCTGGATCA GCGATTCAGG TAAGCTCGAC CCGAACTTCT ACCTGGCTTT GGTTACAATG
CACGGTACCA TCATGGTATT CTTTGTATTG ACGGCCGGTT TGAGCGGTAC TTTCAGTAAC
TTCCTTATCC CGCTGCAAGT GGGAGCGCGC GATATGGCGT CAGGTTTTAT GAACATGCTT
TCTTACTGGT TCTTCTTCCT GGCCAGCATT ATCATGTTCG CTTCTTTGTT CCTGCAACAA
GGCCCTGCGG CAGGTGGCTG GGTAATTTAC CCTCCATTGA GCGCATTGCC ACAGGCGCAC
CCGGGCTCAG GCATGGGTAT GACATTGTGG TTGGCCAGTA TGGCATTCTT TATCGTATCG
CAGCTGCTGG GTGGTATCAA CTACATCACA ACGGTAATCA ACCTGCGTAC AAGAGGTATG
TCTTTCGACC GTCTGCCTCT GACGATCTGG TCGTTCCTTA TCACCGCGGT GCTGGGTCTG
ATCTCATTCC CTGTATTGCT TTCGTCTGTA TTGCTGCTGA TCTTCGACCG TCACTTCGGT
ACAAGCTTCT ATCTTTCCGA CATTTATATC AATGGTGAAG CGCTGCCAAA CGTGGGTGGT
AGCCCGATCC TGTTCCAGCA CTTGTTCTGG TTCCTTGGTC ACCCTGAGGT ATACATCGTA
CTTTTGCCTG CTTTGGGTAT CACATCCGAA GTAATCGCGA CAAACGCCCG CAAGCCGATC
TTCGGTTACC GTGCGATGAT CGCTTCCATG CTCGGTATCG CATTCCTTGC ATTTATCGTA
TGGGCGCACC ACATGTTTGT AACAGGTATG AACCCGTTCC TGGGATCGGT CTTCATGTTC
CTTACACTGA TCATTGCCGT ACCATCTGCA GTGAAAGGCT TCAACTACAT TACTACACTC
TGGAGAGGTA ACATTGTGTT CACTCCCGGT ATGTTGTTCT CGATCGGTCT GGTTTCCCTG
TTCGTATCAG GTGGTTTGAC TGGTATCATC CTCGGTAACA GCGCATTGGA TATTCAATTG
CACGATACTT ACTTCGTAGT AGCCCACTTC CACCTTGTAA TGGGTGCGGC ATCGGCATTC
GGTTTGTTCG CAGGGGTTTA CCACTGGTTC CCTAAAATGT TCGGCCGCAT GATGAACACC
TCATTGGGTC AGGTTCACTT CTGGTTGACA TTCATCGGAA TTTACCTCGT GTTTATTCCA
ATGCACTATG TGGGTATCGC GGGCTTCCCT CGTCGTTACT ACCAGTTCAC CAGCTACGAT
TTCACGAATA AGTTCATGGA TATGAATATG TTTATCTCTC TTGCGGCGAT ATTCACGTTC
CTGGCACAGT TCGTATTCCT CTGGAACTTC TTTTACAGCA TTTTCAAAGG AAGAAGAGCT
CCGCAAAACC CATGGCGTTC GAATACGCTC GAATGGACTG CTCCTGTTGT TCCGGGTCAC
GGAAACTGGG AAGGCGAGAT TCCTGCGGTG TATCGTTGGT CGTATGATTA CAGCAAACCG
GGTGCGAAAG AGGACTTTAT CCCTCAAAAC ATTCCGTATT CTCAAACACC TGAATCGAAC
TTCCCTCATG AGAATGAGCT GATCGCAACC GAAAAGGTGA TTGAGTCCCA AAACTTTAAT
GACCAGTTCA AAACACATCA TTGA
|
|---|
| Protein sequence | MSAIEGLETA HHHADEHDHH HEAQSFWQKY VFCEDHKVIA KQYLITGILW AVIGITMSVI
FRIQLGLPDS NLSWLKPVLG GWISDSGKLD PNFYLALVTM HGTIMVFFVL TAGLSGTFSN
FLIPLQVGAR DMASGFMNML SYWFFFLASI IMFASLFLQQ GPAAGGWVIY PPLSALPQAH
PGSGMGMTLW LASMAFFIVS QLLGGINYIT TVINLRTRGM SFDRLPLTIW SFLITAVLGL
ISFPVLLSSV LLLIFDRHFG TSFYLSDIYI NGEALPNVGG SPILFQHLFW FLGHPEVYIV
LLPALGITSE VIATNARKPI FGYRAMIASM LGIAFLAFIV WAHHMFVTGM NPFLGSVFMF
LTLIIAVPSA VKGFNYITTL WRGNIVFTPG MLFSIGLVSL FVSGGLTGII LGNSALDIQL
HDTYFVVAHF HLVMGAASAF GLFAGVYHWF PKMFGRMMNT SLGQVHFWLT FIGIYLVFIP
MHYVGIAGFP RRYYQFTSYD FTNKFMDMNM FISLAAIFTF LAQFVFLWNF FYSIFKGRRA
PQNPWRSNTL EWTAPVVPGH GNWEGEIPAV YRWSYDYSKP GAKEDFIPQN IPYSQTPESN
FPHENELIAT EKVIESQNFN DQFKTHH
|
|---|
| |