| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_3452 |
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| Symbol | rplA |
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| ID | 8227032 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 4230119 |
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| End bp | 4230817 |
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| Gene Length | 699 bp |
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| Protein Length | 232 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 644931284 |
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| Product | 50S ribosomal protein L1 |
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| Protein accession | YP_003087827 |
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| Protein GI | 255037206 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0081] Ribosomal protein L1 |
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| TIGRFAM ID | [TIGR01169] ribosomal protein L1, bacterial/chloroplast |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.00102084 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0363138 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGGAAAAT TGACCAAAAA GCAAAAAGAA GCTCTTTCAA AATACGACGC AACCCAGGCT
TACACGCTTG AAGCTGCTGC GGATGTTCTG AAAACGATTT CCTATACCAA ATTTGATGCT
TCCGTGGATA TCGACGTTCG TTTGGGCGTA GATCCCCGTA AAGCTGACCA AATGGTGCGT
GGCGTGGTAA CATTGCCACA CGGAACCGGA AAAGAAGTTC GTGTATTGGT GCTGTGTACT
CCCGACAAGG AGGCAGAAGC GAAAGAGGCA GGAGCAGATT ACGTTGGTCT TGACGAATAC
ATTACAAAAA TCGAGCAAGG CTGGACTGAT ATCGACGTGA TTATTACAAT GCCAAGTGTA
ATGGCAAAAG TAGGTAGACT TGGTAAAGTA TTGGGTCCTC GCGGTCTGAT GCCAAACCCT
AAGTCTGGAA CTGTAACTCC GGATGTAGCG AAAGCGGTGA AGGAAGTGAA AGCGGGTAAA
ATCGACTTCA AAGTTGACAA AACCGGTATC ATCCACACCA GCATCGGAAA GGTATCTTTC
GGAACTGACC AGCTTGCGCA AAACGCAACT GAAGTTATCA ATACCTTGGT TCGCCTTAAG
CCTTCTTCGG CAAAAGGTAC TTACGTAAAA AGCATTCACT TGTCTAGTAC GATGAGCCCG
GGTGTTATTA TTGACAAAAA CACGATTCCA GGATTGTAA
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| Protein sequence | MGKLTKKQKE ALSKYDATQA YTLEAAADVL KTISYTKFDA SVDIDVRLGV DPRKADQMVR
GVVTLPHGTG KEVRVLVLCT PDKEAEAKEA GADYVGLDEY ITKIEQGWTD IDVIITMPSV
MAKVGRLGKV LGPRGLMPNP KSGTVTPDVA KAVKEVKAGK IDFKVDKTGI IHTSIGKVSF
GTDQLAQNAT EVINTLVRLK PSSAKGTYVK SIHLSSTMSP GVIIDKNTIP GL
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